Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purB and pyrE are separated by 11 nucleotides pyrE and DVU2944 are separated by 59 nucleotides DVU2944 and DVU2945 are separated by 38 nucleotides
DVU2942: purB - adenylosuccinate lyase (TIGR), at 3,045,921 to 3,047,213
purB
DVU2943: pyrE - orotate phosphoribosyltransferase (TIGR), at 3,047,225 to 3,047,785
pyrE
DVU2944: DVU2944 - ErfK/YbiS/YcfS/YnhG family protein (TIGR), at 3,047,845 to 3,049,134
DVU2944
DVU2945: DVU2945 - conserved domain protein (TIGR), at 3,049,173 to 3,050,030
DVU2945
Position (kb)
3047
3048
3049
3050 Strain fitness (log2 ratio)
-2
-1
0
1 at 3047.939 kb on - strand at 3047.940 kb on - strand at 3047.951 kb on - strand at 3047.960 kb on + strand at 3047.968 kb on - strand at 3047.968 kb on - strand at 3047.968 kb on - strand at 3047.994 kb on - strand, within DVU2944 at 3048.049 kb on + strand, within DVU2944 at 3048.065 kb on - strand, within DVU2944 at 3048.118 kb on - strand, within DVU2944 at 3048.197 kb on + strand, within DVU2944 at 3048.266 kb on + strand, within DVU2944 at 3048.349 kb on - strand, within DVU2944 at 3048.396 kb on - strand, within DVU2944 at 3048.403 kb on + strand, within DVU2944 at 3048.468 kb on + strand, within DVU2944 at 3048.526 kb on + strand, within DVU2944 at 3048.561 kb on + strand, within DVU2944 at 3048.561 kb on + strand, within DVU2944 at 3048.573 kb on + strand, within DVU2944 at 3048.581 kb on - strand, within DVU2944 at 3048.597 kb on - strand, within DVU2944 at 3048.599 kb on + strand, within DVU2944 at 3048.599 kb on + strand, within DVU2944 at 3048.607 kb on - strand, within DVU2944 at 3048.648 kb on + strand, within DVU2944 at 3048.656 kb on - strand, within DVU2944 at 3048.667 kb on - strand, within DVU2944 at 3048.827 kb on + strand, within DVU2944 at 3048.847 kb on - strand, within DVU2944 at 3049.073 kb on + strand at 3049.147 kb on - strand at 3049.192 kb on + strand at 3049.266 kb on - strand, within DVU2945 at 3049.439 kb on - strand, within DVU2945 at 3049.768 kb on + strand, within DVU2945 at 3049.786 kb on - strand, within DVU2945 at 3049.934 kb on + strand, within DVU2945
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 3,047,939 - -0.2 3,047,940 - -0.8 3,047,951 - -0.5 3,047,960 + -1.7 3,047,968 - -0.7 3,047,968 - -1.2 3,047,968 - -1.2 3,047,994 - DVU2944 0.12 -0.3 3,048,049 + DVU2944 0.16 -2.0 3,048,065 - DVU2944 0.17 -0.3 3,048,118 - DVU2944 0.21 -0.9 3,048,197 + DVU2944 0.27 +0.3 3,048,266 + DVU2944 0.33 -0.9 3,048,349 - DVU2944 0.39 -1.3 3,048,396 - DVU2944 0.43 -0.6 3,048,403 + DVU2944 0.43 -1.3 3,048,468 + DVU2944 0.48 -1.7 3,048,526 + DVU2944 0.53 -0.1 3,048,561 + DVU2944 0.56 +0.1 3,048,561 + DVU2944 0.56 -1.1 3,048,573 + DVU2944 0.56 -0.4 3,048,581 - DVU2944 0.57 -2.2 3,048,597 - DVU2944 0.58 +1.4 3,048,599 + DVU2944 0.58 -0.4 3,048,599 + DVU2944 0.58 -0.2 3,048,607 - DVU2944 0.59 -0.8 3,048,648 + DVU2944 0.62 -0.4 3,048,656 - DVU2944 0.63 -0.7 3,048,667 - DVU2944 0.64 +0.2 3,048,827 + DVU2944 0.76 -1.0 3,048,847 - DVU2944 0.78 -1.3 3,049,073 + +0.6 3,049,147 - -0.0 3,049,192 + -1.4 3,049,266 - DVU2945 0.11 -0.3 3,049,439 - DVU2945 0.31 +1.0 3,049,768 + DVU2945 0.69 -0.2 3,049,786 - DVU2945 0.71 +1.1 3,049,934 + DVU2945 0.89 +0.1
Or see this region's nucleotide sequence