Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2540

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntthrS and tRNA-Val are separated by 85 nucleotidestRNA-Val and DVU2539 are separated by 24 nucleotidesDVU2539 and DVU2540 are separated by 5 nucleotidesDVU2540 and DVU2541 are separated by 7 nucleotides DVU2538: thrS - threonyl-tRNA synthetase (TIGR), at 2,649,245 to 2,651,179 thrS DVU_tRNA-Val-2: tRNA-Val - tRNA with anticodon GAC for Val (VIMSS-AUTO), at 2,651,265 to 2,651,339 tRNA-Val DVU2539: DVU2539 - hypothetical protein (TIGR), at 2,651,364 to 2,651,486 DVU2539 DVU2540: DVU2540 - lyase, putative (TIGR), at 2,651,492 to 2,652,634 DVU2540 DVU2541: DVU2541 - CoA-substrate-specific enzyme activase, putative (TIGR), at 2,652,642 to 2,653,451 DVU2541 Position (kb) 2651 2652 2653Strain fitness (log2 ratio) -2 -1 0 1 2at 2651.462 kb on + strand, within DVU2539at 2651.479 kb on + strandat 2651.529 kb on + strandat 2651.551 kb on + strandat 2651.559 kb on - strandat 2651.595 kb on - strandat 2651.611 kb on + strand, within DVU2540at 2651.617 kb on - strand, within DVU2540at 2651.634 kb on - strand, within DVU2540at 2651.634 kb on - strand, within DVU2540at 2651.720 kb on - strand, within DVU2540at 2651.732 kb on - strand, within DVU2540at 2651.742 kb on + strand, within DVU2540at 2651.778 kb on + strand, within DVU2540at 2651.811 kb on - strand, within DVU2540at 2651.829 kb on - strand, within DVU2540at 2651.843 kb on + strand, within DVU2540at 2651.870 kb on - strand, within DVU2540at 2651.920 kb on - strand, within DVU2540at 2651.946 kb on - strand, within DVU2540at 2651.948 kb on - strand, within DVU2540at 2651.957 kb on + strand, within DVU2540at 2652.009 kb on - strand, within DVU2540at 2652.091 kb on - strand, within DVU2540at 2652.139 kb on - strand, within DVU2540at 2652.165 kb on - strand, within DVU2540at 2652.186 kb on - strand, within DVU2540at 2652.202 kb on + strand, within DVU2540at 2652.225 kb on + strand, within DVU2540at 2652.225 kb on + strand, within DVU2540at 2652.241 kb on + strand, within DVU2540at 2652.283 kb on - strand, within DVU2540at 2652.487 kb on + strand, within DVU2540at 2652.519 kb on + strand, within DVU2540at 2652.546 kb on + strandat 2652.704 kb on - strandat 2652.745 kb on + strand, within DVU2541at 2652.745 kb on + strand, within DVU2541at 2652.847 kb on + strand, within DVU2541at 2652.869 kb on + strand, within DVU2541at 2652.900 kb on - strand, within DVU2541at 2652.928 kb on + strand, within DVU2541at 2652.936 kb on - strand, within DVU2541at 2652.964 kb on + strand, within DVU2541at 2652.977 kb on + strand, within DVU2541at 2653.000 kb on - strand, within DVU2541at 2653.010 kb on + strand, within DVU2541at 2653.035 kb on + strand, within DVU2541at 2653.043 kb on + strand, within DVU2541at 2653.092 kb on + strand, within DVU2541at 2653.102 kb on + strand, within DVU2541at 2653.102 kb on + strand, within DVU2541at 2653.102 kb on + strand, within DVU2541at 2653.107 kb on + strand, within DVU2541at 2653.126 kb on + strand, within DVU2541at 2653.134 kb on + strand, within DVU2541at 2653.203 kb on + strand, within DVU2541at 2653.270 kb on + strand, within DVU2541at 2653.320 kb on - strand, within DVU2541at 2653.376 kb on + strandat 2653.377 kb on - strandat 2653.384 kb on - strandat 2653.388 kb on + strandat 2653.453 kb on + strandat 2653.470 kb on + strandat 2653.478 kb on - strandat 2653.478 kb on - strandat 2653.559 kb on + strandat 2653.559 kb on + strandat 2653.567 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
2,651,462 + DVU2539 0.80 -0.3
2,651,479 + -0.7
2,651,529 + -0.4
2,651,551 + -0.7
2,651,559 - +0.2
2,651,595 - +0.7
2,651,611 + DVU2540 0.10 +1.2
2,651,617 - DVU2540 0.11 -1.0
2,651,634 - DVU2540 0.12 +0.0
2,651,634 - DVU2540 0.12 -0.8
2,651,720 - DVU2540 0.20 -0.8
2,651,732 - DVU2540 0.21 +0.4
2,651,742 + DVU2540 0.22 -0.6
2,651,778 + DVU2540 0.25 -0.9
2,651,811 - DVU2540 0.28 -0.1
2,651,829 - DVU2540 0.29 -0.8
2,651,843 + DVU2540 0.31 -2.1
2,651,870 - DVU2540 0.33 -1.0
2,651,920 - DVU2540 0.37 -0.8
2,651,946 - DVU2540 0.40 +0.1
2,651,948 - DVU2540 0.40 -0.5
2,651,957 + DVU2540 0.41 +0.2
2,652,009 - DVU2540 0.45 -0.4
2,652,091 - DVU2540 0.52 -0.2
2,652,139 - DVU2540 0.57 +0.1
2,652,165 - DVU2540 0.59 -0.6
2,652,186 - DVU2540 0.61 -1.3
2,652,202 + DVU2540 0.62 -0.4
2,652,225 + DVU2540 0.64 +0.3
2,652,225 + DVU2540 0.64 -0.9
2,652,241 + DVU2540 0.66 +0.5
2,652,283 - DVU2540 0.69 +0.2
2,652,487 + DVU2540 0.87 -0.2
2,652,519 + DVU2540 0.90 -1.2
2,652,546 + -1.2
2,652,704 - -0.2
2,652,745 + DVU2541 0.13 +0.2
2,652,745 + DVU2541 0.13 -0.4
2,652,847 + DVU2541 0.25 +0.8
2,652,869 + DVU2541 0.28 +0.1
2,652,900 - DVU2541 0.32 -0.3
2,652,928 + DVU2541 0.35 +0.3
2,652,936 - DVU2541 0.36 -0.5
2,652,964 + DVU2541 0.40 +1.9
2,652,977 + DVU2541 0.41 -0.6
2,653,000 - DVU2541 0.44 +0.1
2,653,010 + DVU2541 0.45 -0.3
2,653,035 + DVU2541 0.49 +0.5
2,653,043 + DVU2541 0.50 +1.0
2,653,092 + DVU2541 0.56 +0.8
2,653,102 + DVU2541 0.57 -0.4
2,653,102 + DVU2541 0.57 -0.9
2,653,102 + DVU2541 0.57 -0.6
2,653,107 + DVU2541 0.57 -0.0
2,653,126 + DVU2541 0.60 +2.6
2,653,134 + DVU2541 0.61 +0.1
2,653,203 + DVU2541 0.69 -1.0
2,653,270 + DVU2541 0.78 -0.2
2,653,320 - DVU2541 0.84 +0.0
2,653,376 + +0.1
2,653,377 - -0.8
2,653,384 - +0.8
2,653,388 + -1.0
2,653,453 + -0.6
2,653,470 + -0.9
2,653,478 - +0.1
2,653,478 - -1.0
2,653,559 + -0.3
2,653,559 + -0.4
2,653,567 - -2.4

Or see this region's nucleotide sequence