Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1849

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1847 and DVU1848 are separated by 162 nucleotidesDVU1848 and pcm are separated by 3 nucleotidespcm and DVU1850 are separated by 224 nucleotidesDVU1850 and DVU1851 are separated by 80 nucleotides DVU1847: DVU1847 - conserved hypothetical protein (TIGR), at 1,915,787 to 1,916,680 DVU1847 DVU1848: DVU1848 - conserved hypothetical protein (TIGR), at 1,916,843 to 1,917,436 DVU1848 DVU1849: pcm - protein-L-isoaspartate O-methyltransferase (TIGR), at 1,917,440 to 1,918,072 pcm DVU1850: DVU1850 - CBS domain protein (TIGR), at 1,918,297 to 1,918,725 DVU1850 DVU1851: DVU1851 - peptidase, M23/M37 family (TIGR), at 1,918,806 to 1,920,128 DVU1851 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -2 -1 0 1 2at 1916.770 kb on + strandat 1916.778 kb on - strandat 1916.788 kb on - strandat 1916.929 kb on + strand, within DVU1848at 1916.946 kb on + strand, within DVU1848at 1916.959 kb on - strand, within DVU1848at 1917.027 kb on + strand, within DVU1848at 1917.075 kb on + strand, within DVU1848at 1917.208 kb on + strand, within DVU1848at 1917.251 kb on + strand, within DVU1848at 1917.254 kb on - strand, within DVU1848at 1917.347 kb on + strand, within DVU1848at 1917.424 kb on + strandat 1917.571 kb on - strand, within pcmat 1917.665 kb on - strand, within pcmat 1917.693 kb on + strand, within pcmat 1917.775 kb on + strand, within pcmat 1917.812 kb on + strand, within pcmat 1917.812 kb on + strand, within pcmat 1917.897 kb on + strand, within pcmat 1917.944 kb on - strand, within pcmat 1918.224 kb on - strandat 1918.260 kb on + strandat 1918.457 kb on - strand, within DVU1850at 1918.584 kb on + strand, within DVU1850at 1918.709 kb on - strandat 1918.709 kb on - strandat 1918.727 kb on + strandat 1918.802 kb on + strandat 1918.911 kb on - strandat 1919.037 kb on - strand, within DVU1851

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
1,916,770 + -0.3
1,916,778 - +0.6
1,916,788 - +0.2
1,916,929 + DVU1848 0.14 -2.0
1,916,946 + DVU1848 0.17 -1.7
1,916,959 - DVU1848 0.20 -1.6
1,917,027 + DVU1848 0.31 +2.5
1,917,075 + DVU1848 0.39 -1.0
1,917,208 + DVU1848 0.61 -1.4
1,917,251 + DVU1848 0.69 -1.5
1,917,254 - DVU1848 0.69 +0.4
1,917,347 + DVU1848 0.85 -1.0
1,917,424 + -1.2
1,917,571 - pcm DVU1849 0.21 -1.8
1,917,665 - pcm DVU1849 0.36 -0.9
1,917,693 + pcm DVU1849 0.40 -0.3
1,917,775 + pcm DVU1849 0.53 -1.7
1,917,812 + pcm DVU1849 0.59 -2.7
1,917,812 + pcm DVU1849 0.59 -0.8
1,917,897 + pcm DVU1849 0.72 -0.3
1,917,944 - pcm DVU1849 0.80 -0.9
1,918,224 - -0.5
1,918,260 + -0.5
1,918,457 - DVU1850 0.37 -0.7
1,918,584 + DVU1850 0.67 +0.2
1,918,709 - -0.4
1,918,709 - +0.3
1,918,727 + +0.3
1,918,802 + -1.1
1,918,911 - -0.8
1,919,037 - DVU1851 0.17 -0.4

Or see this region's nucleotide sequence