Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1823

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1822 and gltB-1 are separated by 14 nucleotidesgltB-1 and DVU1824 are separated by 218 nucleotides DVU1822: DVU1822 - glutamate synthase, amidotransferase subunit, putative (TIGR), at 1,886,664 to 1,887,758 DVU1822 DVU1823: gltB-1 - glutamate synthase, iron-sulfur cluster-binding subunit, putative (TIGR), at 1,887,773 to 1,889,296 gltB-1 DVU1824: DVU1824 - conserved hypothetical protein (TIGR), at 1,889,515 to 1,890,279 DVU1824 Position (kb) 1887 1888 1889 1890Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1886.874 kb on + strand, within DVU1822at 1886.882 kb on - strand, within DVU1822at 1886.884 kb on + strand, within DVU1822at 1887.037 kb on + strand, within DVU1822at 1887.133 kb on + strand, within DVU1822at 1887.138 kb on + strand, within DVU1822at 1887.198 kb on + strand, within DVU1822at 1887.198 kb on + strand, within DVU1822at 1887.352 kb on - strand, within DVU1822at 1887.381 kb on - strand, within DVU1822at 1887.399 kb on + strand, within DVU1822at 1887.431 kb on + strand, within DVU1822at 1887.487 kb on + strand, within DVU1822at 1887.566 kb on + strand, within DVU1822at 1887.566 kb on + strand, within DVU1822at 1887.572 kb on - strand, within DVU1822at 1887.622 kb on + strand, within DVU1822at 1887.667 kb on + strandat 1887.681 kb on - strandat 1887.765 kb on + strandat 1887.830 kb on + strandat 1887.831 kb on - strandat 1887.861 kb on + strandat 1887.959 kb on + strand, within gltB-1at 1887.969 kb on + strand, within gltB-1at 1887.997 kb on - strand, within gltB-1at 1888.007 kb on - strand, within gltB-1at 1888.045 kb on + strand, within gltB-1at 1888.180 kb on - strand, within gltB-1at 1888.201 kb on + strand, within gltB-1at 1888.206 kb on + strand, within gltB-1at 1888.251 kb on + strand, within gltB-1at 1888.260 kb on - strand, within gltB-1at 1888.297 kb on - strand, within gltB-1at 1888.378 kb on - strand, within gltB-1at 1888.378 kb on - strand, within gltB-1at 1888.401 kb on + strand, within gltB-1at 1888.422 kb on + strand, within gltB-1at 1888.463 kb on - strand, within gltB-1at 1888.522 kb on - strand, within gltB-1at 1888.578 kb on + strand, within gltB-1at 1888.586 kb on - strand, within gltB-1at 1888.647 kb on + strand, within gltB-1at 1888.647 kb on + strand, within gltB-1at 1888.655 kb on - strand, within gltB-1at 1888.659 kb on + strand, within gltB-1at 1888.669 kb on - strand, within gltB-1at 1888.898 kb on + strand, within gltB-1at 1888.979 kb on + strand, within gltB-1at 1888.994 kb on - strand, within gltB-1at 1889.017 kb on + strand, within gltB-1at 1889.046 kb on + strand, within gltB-1at 1889.076 kb on + strand, within gltB-1at 1889.103 kb on + strand, within gltB-1at 1889.150 kb on + strandat 1889.158 kb on - strandat 1889.185 kb on + strandat 1889.210 kb on + strandat 1889.344 kb on - strandat 1889.568 kb on - strandat 1889.616 kb on + strand, within DVU1824at 1889.633 kb on + strand, within DVU1824at 1889.756 kb on + strand, within DVU1824at 1889.791 kb on - strand, within DVU1824at 1889.812 kb on + strand, within DVU1824at 1889.820 kb on - strand, within DVU1824at 1889.856 kb on - strand, within DVU1824at 1889.863 kb on - strand, within DVU1824at 1889.874 kb on + strand, within DVU1824at 1889.882 kb on - strand, within DVU1824at 1889.902 kb on + strand, within DVU1824at 1889.905 kb on - strand, within DVU1824at 1889.908 kb on + strand, within DVU1824at 1889.925 kb on - strand, within DVU1824at 1889.932 kb on - strand, within DVU1824at 1889.964 kb on - strand, within DVU1824at 1889.969 kb on + strand, within DVU1824at 1890.049 kb on + strand, within DVU1824at 1890.075 kb on + strand, within DVU1824at 1890.168 kb on + strand, within DVU1824at 1890.170 kb on + strand, within DVU1824at 1890.196 kb on - strand, within DVU1824at 1890.202 kb on - strand, within DVU1824at 1890.227 kb on - strandat 1890.261 kb on + strandat 1890.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,886,874 + DVU1822 0.19 -2.2
1,886,882 - DVU1822 0.20 -1.9
1,886,884 + DVU1822 0.20 -3.5
1,887,037 + DVU1822 0.34 -3.2
1,887,133 + DVU1822 0.43 -3.1
1,887,138 + DVU1822 0.43 -4.2
1,887,198 + DVU1822 0.49 -5.1
1,887,198 + DVU1822 0.49 -1.9
1,887,352 - DVU1822 0.63 -2.2
1,887,381 - DVU1822 0.65 -3.7
1,887,399 + DVU1822 0.67 -0.8
1,887,431 + DVU1822 0.70 -2.8
1,887,487 + DVU1822 0.75 -3.1
1,887,566 + DVU1822 0.82 -4.1
1,887,566 + DVU1822 0.82 -4.6
1,887,572 - DVU1822 0.83 -0.3
1,887,622 + DVU1822 0.87 -4.9
1,887,667 + -4.2
1,887,681 - -2.7
1,887,765 + -4.3
1,887,830 + -4.2
1,887,831 - -3.3
1,887,861 + -4.7
1,887,959 + gltB-1 DVU1823 0.12 -3.1
1,887,969 + gltB-1 DVU1823 0.13 -4.5
1,887,997 - gltB-1 DVU1823 0.15 -1.8
1,888,007 - gltB-1 DVU1823 0.15 +1.2
1,888,045 + gltB-1 DVU1823 0.18 -3.5
1,888,180 - gltB-1 DVU1823 0.27 -4.7
1,888,201 + gltB-1 DVU1823 0.28 -1.0
1,888,206 + gltB-1 DVU1823 0.28 -3.4
1,888,251 + gltB-1 DVU1823 0.31 -4.1
1,888,260 - gltB-1 DVU1823 0.32 -3.7
1,888,297 - gltB-1 DVU1823 0.34 -4.6
1,888,378 - gltB-1 DVU1823 0.40 -0.7
1,888,378 - gltB-1 DVU1823 0.40 -3.8
1,888,401 + gltB-1 DVU1823 0.41 -3.5
1,888,422 + gltB-1 DVU1823 0.43 -4.0
1,888,463 - gltB-1 DVU1823 0.45 -1.7
1,888,522 - gltB-1 DVU1823 0.49 -2.6
1,888,578 + gltB-1 DVU1823 0.53 +0.5
1,888,586 - gltB-1 DVU1823 0.53 -2.2
1,888,647 + gltB-1 DVU1823 0.57 -4.2
1,888,647 + gltB-1 DVU1823 0.57 -1.0
1,888,655 - gltB-1 DVU1823 0.58 -3.9
1,888,659 + gltB-1 DVU1823 0.58 -3.7
1,888,669 - gltB-1 DVU1823 0.59 -4.1
1,888,898 + gltB-1 DVU1823 0.74 +0.5
1,888,979 + gltB-1 DVU1823 0.79 -3.1
1,888,994 - gltB-1 DVU1823 0.80 -1.5
1,889,017 + gltB-1 DVU1823 0.82 -2.9
1,889,046 + gltB-1 DVU1823 0.84 -2.6
1,889,076 + gltB-1 DVU1823 0.85 -2.0
1,889,103 + gltB-1 DVU1823 0.87 -4.1
1,889,150 + -4.4
1,889,158 - -2.9
1,889,185 + -4.4
1,889,210 + -3.0
1,889,344 - -1.1
1,889,568 - +0.4
1,889,616 + DVU1824 0.13 +1.9
1,889,633 + DVU1824 0.15 -0.5
1,889,756 + DVU1824 0.32 +1.0
1,889,791 - DVU1824 0.36 -0.5
1,889,812 + DVU1824 0.39 +0.5
1,889,820 - DVU1824 0.40 +0.6
1,889,856 - DVU1824 0.45 +0.8
1,889,863 - DVU1824 0.45 +0.8
1,889,874 + DVU1824 0.47 +0.5
1,889,882 - DVU1824 0.48 +0.6
1,889,902 + DVU1824 0.51 +0.3
1,889,905 - DVU1824 0.51 +1.7
1,889,908 + DVU1824 0.51 -1.1
1,889,925 - DVU1824 0.54 -0.3
1,889,932 - DVU1824 0.55 +0.4
1,889,964 - DVU1824 0.59 +0.6
1,889,969 + DVU1824 0.59 -0.8
1,890,049 + DVU1824 0.70 +0.7
1,890,075 + DVU1824 0.73 -0.3
1,890,168 + DVU1824 0.85 -0.0
1,890,170 + DVU1824 0.86 -0.5
1,890,196 - DVU1824 0.89 -0.3
1,890,202 - DVU1824 0.90 -0.0
1,890,227 - -0.1
1,890,261 + -0.9
1,890,269 - -0.4

Or see this region's nucleotide sequence