Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1806

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1805 and mgtE are separated by 235 nucleotidesmgtE and nadC are separated by 143 nucleotides DVU1805: DVU1805 - GGDEF domain protein (TIGR), at 1,868,457 to 1,869,920 DVU1805 DVU1806: mgtE - magnesium transporter (TIGR), at 1,870,156 to 1,871,526 mgtE DVU1807: nadC - nicotinate-nucleotide pyrophosphorylase (TIGR), at 1,871,670 to 1,872,557 nadC Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1869.209 kb on - strand, within DVU1805at 1869.209 kb on - strand, within DVU1805at 1869.227 kb on - strand, within DVU1805at 1869.256 kb on + strand, within DVU1805at 1869.313 kb on - strand, within DVU1805at 1869.366 kb on + strand, within DVU1805at 1869.414 kb on + strand, within DVU1805at 1869.526 kb on - strand, within DVU1805at 1869.610 kb on - strand, within DVU1805at 1869.641 kb on + strand, within DVU1805at 1869.724 kb on + strand, within DVU1805at 1869.732 kb on - strand, within DVU1805at 1869.771 kb on - strand, within DVU1805at 1869.815 kb on + strandat 1869.836 kb on + strandat 1869.842 kb on - strandat 1869.996 kb on - strandat 1870.038 kb on + strandat 1870.058 kb on - strandat 1870.157 kb on - strandat 1870.189 kb on + strandat 1870.262 kb on + strandat 1870.267 kb on + strandat 1870.346 kb on + strand, within mgtEat 1870.375 kb on - strand, within mgtEat 1870.375 kb on - strand, within mgtEat 1870.377 kb on + strand, within mgtEat 1870.402 kb on - strand, within mgtEat 1870.461 kb on + strand, within mgtEat 1870.520 kb on - strand, within mgtEat 1870.722 kb on - strand, within mgtEat 1870.723 kb on - strand, within mgtEat 1870.861 kb on - strand, within mgtEat 1870.861 kb on - strand, within mgtEat 1871.187 kb on - strand, within mgtEat 1871.187 kb on - strand, within mgtEat 1871.237 kb on + strand, within mgtEat 1871.277 kb on - strand, within mgtEat 1871.391 kb on + strandat 1871.414 kb on - strandat 1871.494 kb on + strandat 1871.544 kb on + strandat 1871.586 kb on + strandat 1871.588 kb on - strandat 1871.604 kb on + strandat 1871.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,869,209 - DVU1805 0.51 +0.1
1,869,209 - DVU1805 0.51 -0.1
1,869,227 - DVU1805 0.53 +0.2
1,869,256 + DVU1805 0.55 +0.0
1,869,313 - DVU1805 0.58 -1.0
1,869,366 + DVU1805 0.62 +3.1
1,869,414 + DVU1805 0.65 +0.6
1,869,526 - DVU1805 0.73 -0.1
1,869,610 - DVU1805 0.79 +0.2
1,869,641 + DVU1805 0.81 +0.6
1,869,724 + DVU1805 0.87 +0.1
1,869,732 - DVU1805 0.87 +0.1
1,869,771 - DVU1805 0.90 -0.5
1,869,815 + -0.2
1,869,836 + +0.1
1,869,842 - -0.7
1,869,996 - -0.8
1,870,038 + +1.3
1,870,058 - -0.5
1,870,157 - +0.1
1,870,189 + -0.1
1,870,262 + +0.4
1,870,267 + -0.3
1,870,346 + mgtE DVU1806 0.14 -0.6
1,870,375 - mgtE DVU1806 0.16 +0.3
1,870,375 - mgtE DVU1806 0.16 -0.8
1,870,377 + mgtE DVU1806 0.16 -0.6
1,870,402 - mgtE DVU1806 0.18 -0.7
1,870,461 + mgtE DVU1806 0.22 +0.7
1,870,520 - mgtE DVU1806 0.27 -1.4
1,870,722 - mgtE DVU1806 0.41 +0.1
1,870,723 - mgtE DVU1806 0.41 +0.4
1,870,861 - mgtE DVU1806 0.51 +1.5
1,870,861 - mgtE DVU1806 0.51 -1.9
1,871,187 - mgtE DVU1806 0.75 +1.6
1,871,187 - mgtE DVU1806 0.75 +1.0
1,871,237 + mgtE DVU1806 0.79 +0.8
1,871,277 - mgtE DVU1806 0.82 +1.3
1,871,391 + -0.3
1,871,414 - +0.2
1,871,494 + -0.6
1,871,544 + +0.2
1,871,586 + +0.2
1,871,588 - +0.2
1,871,604 + +0.4
1,871,646 - -0.5

Or see this region's nucleotide sequence