Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1682

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmreB-2 and DVU1682 overlap by 1 nucleotidesDVU1682 and DVU1683 are separated by 268 nucleotides DVU1681: mreB-2 - rod shape-determining protein MreB (TIGR), at 1,758,877 to 1,759,899 mreB-2 DVU1682: DVU1682 - GAF domain protein (TIGR), at 1,759,899 to 1,760,933 DVU1682 DVU1683: DVU1683 - hypothetical protein (TIGR), at 1,761,202 to 1,762,938 DVU1683 Position (kb) 1759 1760 1761Strain fitness (log2 ratio) -2 -1 0 1 2at 1758.920 kb on - strandat 1758.979 kb on - strandat 1758.979 kb on - strandat 1759.010 kb on + strand, within mreB-2at 1759.079 kb on - strand, within mreB-2at 1759.086 kb on + strand, within mreB-2at 1759.127 kb on + strand, within mreB-2at 1759.127 kb on + strand, within mreB-2at 1759.127 kb on + strand, within mreB-2at 1759.135 kb on - strand, within mreB-2at 1759.172 kb on + strand, within mreB-2at 1759.198 kb on - strand, within mreB-2at 1759.420 kb on + strand, within mreB-2at 1759.433 kb on - strand, within mreB-2at 1759.443 kb on - strand, within mreB-2at 1759.664 kb on - strand, within mreB-2at 1759.692 kb on + strand, within mreB-2at 1759.811 kb on - strandat 1759.896 kb on + strandat 1759.971 kb on - strandat 1760.088 kb on + strand, within DVU1682at 1760.100 kb on + strand, within DVU1682at 1760.100 kb on + strand, within DVU1682at 1760.108 kb on - strand, within DVU1682at 1760.108 kb on - strand, within DVU1682at 1760.120 kb on - strand, within DVU1682at 1760.179 kb on + strand, within DVU1682at 1760.194 kb on + strand, within DVU1682at 1760.244 kb on - strand, within DVU1682at 1760.620 kb on + strand, within DVU1682at 1760.779 kb on - strand, within DVU1682at 1760.856 kb on + strandat 1760.864 kb on - strandat 1761.032 kb on + strandat 1761.040 kb on - strandat 1761.094 kb on + strandat 1761.211 kb on + strandat 1761.219 kb on - strandat 1761.282 kb on - strandat 1761.546 kb on - strand, within DVU1683at 1761.586 kb on + strand, within DVU1683at 1761.629 kb on + strand, within DVU1683at 1761.634 kb on + strand, within DVU1683at 1761.693 kb on - strand, within DVU1683at 1761.697 kb on - strand, within DVU1683at 1761.771 kb on - strand, within DVU1683at 1761.773 kb on - strand, within DVU1683

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,758,920 - -0.4
1,758,979 - -0.7
1,758,979 - -0.3
1,759,010 + mreB-2 DVU1681 0.13 +0.1
1,759,079 - mreB-2 DVU1681 0.20 -0.4
1,759,086 + mreB-2 DVU1681 0.20 -1.8
1,759,127 + mreB-2 DVU1681 0.24 -0.1
1,759,127 + mreB-2 DVU1681 0.24 -0.6
1,759,127 + mreB-2 DVU1681 0.24 -0.6
1,759,135 - mreB-2 DVU1681 0.25 -0.7
1,759,172 + mreB-2 DVU1681 0.29 +0.0
1,759,198 - mreB-2 DVU1681 0.31 -0.5
1,759,420 + mreB-2 DVU1681 0.53 +0.0
1,759,433 - mreB-2 DVU1681 0.54 -0.6
1,759,443 - mreB-2 DVU1681 0.55 -0.5
1,759,664 - mreB-2 DVU1681 0.77 -1.2
1,759,692 + mreB-2 DVU1681 0.80 +0.3
1,759,811 - +0.1
1,759,896 + +2.3
1,759,971 - -0.0
1,760,088 + DVU1682 0.18 -1.2
1,760,100 + DVU1682 0.19 +1.5
1,760,100 + DVU1682 0.19 -1.2
1,760,108 - DVU1682 0.20 +1.8
1,760,108 - DVU1682 0.20 -0.8
1,760,120 - DVU1682 0.21 -0.6
1,760,179 + DVU1682 0.27 +0.0
1,760,194 + DVU1682 0.29 +0.4
1,760,244 - DVU1682 0.33 -1.8
1,760,620 + DVU1682 0.70 -0.8
1,760,779 - DVU1682 0.85 +0.6
1,760,856 + -2.1
1,760,864 - +0.8
1,761,032 + +0.2
1,761,040 - +0.2
1,761,094 + -0.7
1,761,211 + -2.5
1,761,219 - -2.3
1,761,282 - -2.7
1,761,546 - DVU1683 0.20 -2.3
1,761,586 + DVU1683 0.22 -1.3
1,761,629 + DVU1683 0.25 -1.4
1,761,634 + DVU1683 0.25 -2.7
1,761,693 - DVU1683 0.28 -0.3
1,761,697 - DVU1683 0.28 -2.4
1,761,771 - DVU1683 0.33 -2.5
1,761,773 - DVU1683 0.33 -1.7

Or see this region's nucleotide sequence