Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1468

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthslU and htrA are separated by 111 nucleotideshtrA and rpsA are separated by 160 nucleotides DVU1467: hslU - heat shock protein HslVU, ATPase subunit HslU (TIGR), at 1,546,644 to 1,547,969 hslU DVU1468: htrA - peptidase/PDZ domain protein (TIGR), at 1,548,081 to 1,549,529 htrA DVU1469: rpsA - ribosomal protein S1, putative (TIGR), at 1,549,690 to 1,551,153 rpsA Position (kb) 1548 1549 1550Strain fitness (log2 ratio) -3 -2 -1 0 1at 1547.163 kb on - strand, within hslUat 1547.183 kb on - strand, within hslUat 1547.220 kb on + strand, within hslUat 1547.263 kb on + strand, within hslUat 1547.271 kb on - strand, within hslUat 1547.284 kb on + strand, within hslUat 1547.292 kb on - strand, within hslUat 1547.310 kb on + strand, within hslUat 1547.318 kb on - strand, within hslUat 1547.335 kb on - strand, within hslUat 1547.400 kb on - strand, within hslUat 1547.546 kb on + strand, within hslUat 1547.604 kb on - strand, within hslUat 1547.627 kb on - strand, within hslUat 1547.705 kb on + strand, within hslUat 1547.746 kb on + strand, within hslUat 1547.746 kb on + strand, within hslUat 1547.746 kb on + strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.756 kb on + strand, within hslUat 1547.781 kb on - strand, within hslUat 1547.787 kb on - strand, within hslUat 1547.964 kb on + strandat 1548.069 kb on + strandat 1548.162 kb on - strandat 1548.201 kb on + strandat 1548.201 kb on + strandat 1548.257 kb on - strand, within htrAat 1548.268 kb on + strand, within htrAat 1548.362 kb on + strand, within htrAat 1548.461 kb on + strand, within htrAat 1548.502 kb on - strand, within htrAat 1548.548 kb on - strand, within htrAat 1548.564 kb on + strand, within htrAat 1548.577 kb on + strand, within htrAat 1548.585 kb on - strand, within htrAat 1548.595 kb on - strand, within htrAat 1548.745 kb on - strand, within htrAat 1548.748 kb on + strand, within htrAat 1548.756 kb on - strand, within htrAat 1548.908 kb on + strand, within htrAat 1548.947 kb on + strand, within htrAat 1548.980 kb on + strand, within htrAat 1548.993 kb on - strand, within htrAat 1549.025 kb on + strand, within htrAat 1549.025 kb on + strand, within htrAat 1549.033 kb on - strand, within htrAat 1549.081 kb on + strand, within htrAat 1549.089 kb on - strand, within htrAat 1549.091 kb on + strand, within htrAat 1549.144 kb on + strand, within htrAat 1549.200 kb on - strand, within htrAat 1549.216 kb on + strand, within htrAat 1549.217 kb on - strand, within htrAat 1549.241 kb on + strand, within htrAat 1549.344 kb on - strand, within htrAat 1549.479 kb on - strandat 1549.583 kb on + strandat 1549.657 kb on - strandat 1549.816 kb on + strandat 1549.906 kb on - strand, within rpsAat 1550.018 kb on - strand, within rpsAat 1550.191 kb on + strand, within rpsAat 1550.283 kb on + strand, within rpsA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,547,163 - hslU DVU1467 0.39 -2.0
1,547,183 - hslU DVU1467 0.41 -0.7
1,547,220 + hslU DVU1467 0.43 -0.6
1,547,263 + hslU DVU1467 0.47 -0.5
1,547,271 - hslU DVU1467 0.47 +1.1
1,547,284 + hslU DVU1467 0.48 +0.3
1,547,292 - hslU DVU1467 0.49 -0.4
1,547,310 + hslU DVU1467 0.50 -2.3
1,547,318 - hslU DVU1467 0.51 +0.9
1,547,335 - hslU DVU1467 0.52 -0.6
1,547,400 - hslU DVU1467 0.57 +0.7
1,547,546 + hslU DVU1467 0.68 -0.4
1,547,604 - hslU DVU1467 0.72 -1.5
1,547,627 - hslU DVU1467 0.74 +1.2
1,547,705 + hslU DVU1467 0.80 -0.7
1,547,746 + hslU DVU1467 0.83 -0.3
1,547,746 + hslU DVU1467 0.83 -0.5
1,547,746 + hslU DVU1467 0.83 -0.1
1,547,754 - hslU DVU1467 0.84 -1.8
1,547,754 - hslU DVU1467 0.84 +0.2
1,547,754 - hslU DVU1467 0.84 +0.1
1,547,754 - hslU DVU1467 0.84 -0.7
1,547,756 + hslU DVU1467 0.84 -0.7
1,547,781 - hslU DVU1467 0.86 -1.0
1,547,787 - hslU DVU1467 0.86 -0.8
1,547,964 + -1.8
1,548,069 + -1.3
1,548,162 - -1.7
1,548,201 + +0.5
1,548,201 + -0.9
1,548,257 - htrA DVU1468 0.12 -0.9
1,548,268 + htrA DVU1468 0.13 -0.7
1,548,362 + htrA DVU1468 0.19 -1.8
1,548,461 + htrA DVU1468 0.26 -1.7
1,548,502 - htrA DVU1468 0.29 -0.5
1,548,548 - htrA DVU1468 0.32 -2.8
1,548,564 + htrA DVU1468 0.33 -0.3
1,548,577 + htrA DVU1468 0.34 -2.8
1,548,585 - htrA DVU1468 0.35 -1.3
1,548,595 - htrA DVU1468 0.35 -2.6
1,548,745 - htrA DVU1468 0.46 -2.8
1,548,748 + htrA DVU1468 0.46 -1.2
1,548,756 - htrA DVU1468 0.47 -0.1
1,548,908 + htrA DVU1468 0.57 -2.5
1,548,947 + htrA DVU1468 0.60 -2.9
1,548,980 + htrA DVU1468 0.62 -2.8
1,548,993 - htrA DVU1468 0.63 -2.5
1,549,025 + htrA DVU1468 0.65 -2.5
1,549,025 + htrA DVU1468 0.65 -2.2
1,549,033 - htrA DVU1468 0.66 -3.6
1,549,081 + htrA DVU1468 0.69 -2.5
1,549,089 - htrA DVU1468 0.70 +0.9
1,549,091 + htrA DVU1468 0.70 -1.7
1,549,144 + htrA DVU1468 0.73 -2.5
1,549,200 - htrA DVU1468 0.77 -3.6
1,549,216 + htrA DVU1468 0.78 -2.7
1,549,217 - htrA DVU1468 0.78 -3.0
1,549,241 + htrA DVU1468 0.80 -0.1
1,549,344 - htrA DVU1468 0.87 -0.1
1,549,479 - -2.0
1,549,583 + -0.2
1,549,657 - -0.7
1,549,816 + -1.1
1,549,906 - rpsA DVU1469 0.15 +0.8
1,550,018 - rpsA DVU1469 0.22 -0.2
1,550,191 + rpsA DVU1469 0.34 -0.2
1,550,283 + rpsA DVU1469 0.41 -0.9

Or see this region's nucleotide sequence