Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1455

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispD and rnpB are separated by 46 nucleotidesrnpB and DVU1455 are separated by 12 nucleotidesDVU1455 and DVU1456 are separated by 40 nucleotides DVU1454: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TIGR), at 1,532,607 to 1,533,794 ispD DvrnpB1: rnpB - RnpB RNA: catalytic subunit of RNase P (VIMSS-AUTO), at 1,533,841 to 1,534,196 rnpB DVU1455: DVU1455 - conserved hypothetical protein (TIGR), at 1,534,209 to 1,534,952 DVU1455 DVU1456: DVU1456 - NIF3 family protein (TIGR), at 1,534,993 to 1,536,003 DVU1456 Position (kb) 1534 1535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1534.231 kb on + strandat 1534.383 kb on + strand, within DVU1455at 1534.549 kb on - strand, within DVU1455at 1534.580 kb on - strand, within DVU1455at 1534.835 kb on + strand, within DVU1455at 1534.835 kb on + strand, within DVU1455at 1534.843 kb on - strand, within DVU1455at 1534.874 kb on - strand, within DVU1455at 1534.908 kb on + strandat 1534.934 kb on + strandat 1535.032 kb on - strandat 1535.084 kb on - strandat 1535.357 kb on + strand, within DVU1456at 1535.482 kb on - strand, within DVU1456at 1535.539 kb on + strand, within DVU1456at 1535.557 kb on - strand, within DVU1456at 1535.575 kb on + strand, within DVU1456at 1535.575 kb on - strand, within DVU1456at 1535.582 kb on - strand, within DVU1456at 1535.745 kb on - strand, within DVU1456at 1535.764 kb on - strand, within DVU1456at 1535.776 kb on - strand, within DVU1456

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,534,231 + -2.0
1,534,383 + DVU1455 0.23 -1.0
1,534,549 - DVU1455 0.46 -1.0
1,534,580 - DVU1455 0.50 +0.7
1,534,835 + DVU1455 0.84 -0.7
1,534,835 + DVU1455 0.84 +0.5
1,534,843 - DVU1455 0.85 -1.5
1,534,874 - DVU1455 0.89 -0.6
1,534,908 + -1.4
1,534,934 + -1.9
1,535,032 - -3.3
1,535,084 - -0.7
1,535,357 + DVU1456 0.36 -1.4
1,535,482 - DVU1456 0.48 +1.9
1,535,539 + DVU1456 0.54 -0.8
1,535,557 - DVU1456 0.56 -0.6
1,535,575 + DVU1456 0.58 -0.9
1,535,575 - DVU1456 0.58 +1.1
1,535,582 - DVU1456 0.58 -1.9
1,535,745 - DVU1456 0.74 -0.1
1,535,764 - DVU1456 0.76 -0.7
1,535,776 - DVU1456 0.77 -1.3

Or see this region's nucleotide sequence