Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1409

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1407 and DVU1408 are separated by 157 nucleotidesDVU1408 and DVU1409 are separated by 17 nucleotidesDVU1409 and DVU1410 are separated by 276 nucleotides DVU1407: DVU1407 - radical SAM domain protein (TIGR), at 1,475,979 to 1,477,454 DVU1407 DVU1408: DVU1408 - hypothetical protein (TIGR), at 1,477,612 to 1,477,914 DVU1408 DVU1409: DVU1409 - hypothetical protein (TIGR), at 1,477,932 to 1,478,396 DVU1409 DVU1410: DVU1410 - conserved domain protein (TIGR), at 1,478,673 to 1,479,545 DVU1410 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -2 -1 0 1at 1477.005 kb on - strand, within DVU1407at 1477.156 kb on - strand, within DVU1407at 1477.405 kb on + strandat 1477.662 kb on - strand, within DVU1408at 1477.662 kb on - strand, within DVU1408at 1477.730 kb on + strand, within DVU1408at 1477.748 kb on + strand, within DVU1408at 1477.756 kb on - strand, within DVU1408at 1477.765 kb on + strand, within DVU1408at 1477.790 kb on + strand, within DVU1408at 1477.808 kb on + strand, within DVU1408at 1477.808 kb on + strand, within DVU1408at 1477.816 kb on - strand, within DVU1408at 1477.940 kb on - strandat 1478.094 kb on + strand, within DVU1409at 1478.137 kb on - strand, within DVU1409at 1478.440 kb on + strandat 1478.496 kb on + strandat 1478.496 kb on + strandat 1478.496 kb on + strandat 1478.504 kb on - strandat 1478.504 kb on - strandat 1478.504 kb on - strandat 1478.568 kb on + strandat 1478.568 kb on + strandat 1478.576 kb on - strandat 1478.741 kb on - strandat 1478.777 kb on + strand, within DVU1410at 1478.867 kb on + strand, within DVU1410at 1478.884 kb on + strand, within DVU1410at 1478.966 kb on - strand, within DVU1410at 1478.994 kb on + strand, within DVU1410at 1479.000 kb on + strand, within DVU1410at 1479.010 kb on + strand, within DVU1410at 1479.030 kb on + strand, within DVU1410at 1479.038 kb on - strand, within DVU1410at 1479.038 kb on - strand, within DVU1410at 1479.043 kb on - strand, within DVU1410at 1479.069 kb on + strand, within DVU1410at 1479.069 kb on + strand, within DVU1410at 1479.072 kb on - strand, within DVU1410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
1,477,005 - DVU1407 0.70 -0.7
1,477,156 - DVU1407 0.80 +1.6
1,477,405 + +0.4
1,477,662 - DVU1408 0.17 +0.6
1,477,662 - DVU1408 0.17 +1.0
1,477,730 + DVU1408 0.39 -0.2
1,477,748 + DVU1408 0.45 -0.1
1,477,756 - DVU1408 0.48 +1.5
1,477,765 + DVU1408 0.50 +0.3
1,477,790 + DVU1408 0.59 -0.0
1,477,808 + DVU1408 0.65 +0.0
1,477,808 + DVU1408 0.65 +0.3
1,477,816 - DVU1408 0.67 +0.5
1,477,940 - +1.6
1,478,094 + DVU1409 0.35 +1.4
1,478,137 - DVU1409 0.44 +1.4
1,478,440 + +0.8
1,478,496 + -0.4
1,478,496 + +0.2
1,478,496 + +0.5
1,478,504 - -0.8
1,478,504 - -0.4
1,478,504 - +0.1
1,478,568 + -0.1
1,478,568 + -0.1
1,478,576 - -0.5
1,478,741 - -0.6
1,478,777 + DVU1410 0.12 +0.4
1,478,867 + DVU1410 0.22 +0.6
1,478,884 + DVU1410 0.24 -0.9
1,478,966 - DVU1410 0.34 -0.6
1,478,994 + DVU1410 0.37 -1.8
1,479,000 + DVU1410 0.37 -1.2
1,479,010 + DVU1410 0.39 -0.2
1,479,030 + DVU1410 0.41 -0.7
1,479,038 - DVU1410 0.42 +1.2
1,479,038 - DVU1410 0.42 -0.6
1,479,043 - DVU1410 0.42 -0.7
1,479,069 + DVU1410 0.45 +0.1
1,479,069 + DVU1410 0.45 -0.2
1,479,072 - DVU1410 0.46 +0.2

Or see this region's nucleotide sequence