Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1364

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1362 and rfbD are separated by 27 nucleotidesrfbD and rfbB overlap by 4 nucleotidesrfbB and DVU1365 are separated by 187 nucleotides DVU1362: DVU1362 - membrane protein, putative (TIGR), at 1,441,052 to 1,442,020 DVU1362 DVU1363: rfbD - dTDP-4-dehydrorhamnose reductase (TIGR), at 1,442,048 to 1,442,923 rfbD DVU1364: rfbB - dTDP-glucose 4,6-dehydratase (TIGR), at 1,442,920 to 1,443,942 rfbB DVU1365: DVU1365 - heme-binding protein, putative (TIGR), at 1,444,130 to 1,444,978 DVU1365 Position (kb) 1442 1443 1444Strain fitness (log2 ratio) -2 -1 0 1at 1442.156 kb on + strand, within rfbDat 1442.234 kb on + strand, within rfbDat 1442.277 kb on + strand, within rfbDat 1442.328 kb on - strand, within rfbDat 1442.410 kb on + strand, within rfbDat 1442.410 kb on + strand, within rfbDat 1442.658 kb on - strand, within rfbDat 1442.683 kb on - strand, within rfbDat 1442.683 kb on - strand, within rfbDat 1442.724 kb on + strand, within rfbDat 1442.746 kb on - strand, within rfbDat 1444.147 kb on + strandat 1444.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,442,156 + rfbD DVU1363 0.12 -1.0
1,442,234 + rfbD DVU1363 0.21 -0.7
1,442,277 + rfbD DVU1363 0.26 +0.2
1,442,328 - rfbD DVU1363 0.32 -0.8
1,442,410 + rfbD DVU1363 0.41 -1.1
1,442,410 + rfbD DVU1363 0.41 -1.1
1,442,658 - rfbD DVU1363 0.70 -1.9
1,442,683 - rfbD DVU1363 0.72 -2.0
1,442,683 - rfbD DVU1363 0.72 -1.2
1,442,724 + rfbD DVU1363 0.77 -1.0
1,442,746 - rfbD DVU1363 0.80 -1.0
1,444,147 + -0.2
1,444,161 - +0.4

Or see this region's nucleotide sequence