Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1091 and DVU1092 are separated by 217 nucleotides DVU1092 and DVU1093 are separated by 189 nucleotides DVU1093 and argH are separated by 132 nucleotides
DVU1091: DVU1091 - conserved hypothetical protein (TIGR), at 1,195,859 to 1,196,965
DVU1091
DVU1092: DVU1092 - sodium-dependent symporter family protein (TIGR), at 1,197,183 to 1,198,544
DVU1092
DVU1093: DVU1093 - HAD-superfamily hydrolase, subfamily IA, variant 3 (TIGR), at 1,198,734 to 1,199,264
DVU1093
DVU1094: argH - argininosuccinate lyase (TIGR), at 1,199,397 to 1,200,779
argH
Position (kb)
1197
1198
1199 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1196.188 kb on - strand, within DVU1091 at 1196.196 kb on - strand, within DVU1091 at 1196.248 kb on + strand, within DVU1091 at 1196.259 kb on + strand, within DVU1091 at 1196.300 kb on + strand, within DVU1091 at 1196.303 kb on - strand, within DVU1091 at 1196.303 kb on - strand, within DVU1091 at 1196.430 kb on - strand, within DVU1091 at 1196.431 kb on - strand, within DVU1091 at 1196.574 kb on + strand, within DVU1091 at 1196.592 kb on - strand, within DVU1091 at 1196.653 kb on - strand, within DVU1091 at 1196.824 kb on - strand, within DVU1091 at 1197.033 kb on + strand at 1197.042 kb on - strand at 1197.050 kb on - strand at 1197.181 kb on - strand at 1197.401 kb on + strand, within DVU1092 at 1197.401 kb on + strand, within DVU1092 at 1197.401 kb on + strand, within DVU1092 at 1197.409 kb on - strand, within DVU1092 at 1197.409 kb on - strand, within DVU1092 at 1197.643 kb on + strand, within DVU1092 at 1197.648 kb on + strand, within DVU1092 at 1197.651 kb on - strand, within DVU1092 at 1197.651 kb on - strand, within DVU1092 at 1197.656 kb on - strand, within DVU1092 at 1197.656 kb on - strand, within DVU1092 at 1197.656 kb on - strand, within DVU1092 at 1197.706 kb on + strand, within DVU1092 at 1197.771 kb on - strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.781 kb on - strand, within DVU1092 at 1197.789 kb on + strand, within DVU1092 at 1197.922 kb on - strand, within DVU1092 at 1197.925 kb on + strand, within DVU1092 at 1197.957 kb on + strand, within DVU1092 at 1197.971 kb on + strand, within DVU1092 at 1197.975 kb on + strand, within DVU1092 at 1197.998 kb on - strand, within DVU1092 at 1198.055 kb on + strand, within DVU1092 at 1198.108 kb on - strand, within DVU1092 at 1198.196 kb on + strand, within DVU1092 at 1198.219 kb on - strand, within DVU1092 at 1198.225 kb on - strand, within DVU1092 at 1198.241 kb on - strand, within DVU1092 at 1198.271 kb on + strand, within DVU1092 at 1198.271 kb on + strand, within DVU1092 at 1198.271 kb on + strand, within DVU1092 at 1198.430 kb on - strand at 1198.468 kb on - strand at 1198.503 kb on - strand at 1198.538 kb on + strand at 1198.663 kb on + strand at 1198.730 kb on - strand at 1198.786 kb on - strand at 1198.848 kb on - strand, within DVU1093 at 1198.927 kb on - strand, within DVU1093 at 1199.081 kb on - strand, within DVU1093 at 1199.211 kb on + strand, within DVU1093 at 1199.226 kb on - strand at 1199.294 kb on - strand at 1199.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 1,196,188 - DVU1091 0.30 -1.0 1,196,196 - DVU1091 0.30 -0.2 1,196,248 + DVU1091 0.35 -1.0 1,196,259 + DVU1091 0.36 +0.3 1,196,300 + DVU1091 0.40 -0.8 1,196,303 - DVU1091 0.40 -1.0 1,196,303 - DVU1091 0.40 -1.7 1,196,430 - DVU1091 0.52 -1.0 1,196,431 - DVU1091 0.52 -1.2 1,196,574 + DVU1091 0.65 -0.2 1,196,592 - DVU1091 0.66 +0.7 1,196,653 - DVU1091 0.72 -1.6 1,196,824 - DVU1091 0.87 -0.3 1,197,033 + -3.0 1,197,042 - +0.2 1,197,050 - +1.5 1,197,181 - +5.3 1,197,401 + DVU1092 0.16 +5.3 1,197,401 + DVU1092 0.16 +6.1 1,197,401 + DVU1092 0.16 +6.3 1,197,409 - DVU1092 0.17 +6.3 1,197,409 - DVU1092 0.17 +6.0 1,197,643 + DVU1092 0.34 +5.8 1,197,648 + DVU1092 0.34 +6.0 1,197,651 - DVU1092 0.34 +4.6 1,197,651 - DVU1092 0.34 +5.7 1,197,656 - DVU1092 0.35 +5.9 1,197,656 - DVU1092 0.35 +5.9 1,197,656 - DVU1092 0.35 +6.0 1,197,706 + DVU1092 0.38 +5.7 1,197,771 - DVU1092 0.43 +5.2 1,197,773 + DVU1092 0.43 +5.9 1,197,773 + DVU1092 0.43 +5.9 1,197,773 + DVU1092 0.43 +6.0 1,197,773 + DVU1092 0.43 +5.8 1,197,781 - DVU1092 0.44 +5.9 1,197,789 + DVU1092 0.44 +5.5 1,197,922 - DVU1092 0.54 +5.9 1,197,925 + DVU1092 0.54 +6.1 1,197,957 + DVU1092 0.57 +6.0 1,197,971 + DVU1092 0.58 +4.4 1,197,975 + DVU1092 0.58 +5.4 1,197,998 - DVU1092 0.60 +6.0 1,198,055 + DVU1092 0.64 +5.8 1,198,108 - DVU1092 0.68 +5.4 1,198,196 + DVU1092 0.74 +5.8 1,198,219 - DVU1092 0.76 +5.9 1,198,225 - DVU1092 0.77 +5.3 1,198,241 - DVU1092 0.78 +5.9 1,198,271 + DVU1092 0.80 +6.2 1,198,271 + DVU1092 0.80 +6.0 1,198,271 + DVU1092 0.80 +6.0 1,198,430 - +5.7 1,198,468 - +5.7 1,198,503 - +5.8 1,198,538 + +2.9 1,198,663 + -0.8 1,198,730 - +0.1 1,198,786 - +1.2 1,198,848 - DVU1093 0.21 +0.2 1,198,927 - DVU1093 0.36 -0.6 1,199,081 - DVU1093 0.65 -0.2 1,199,211 + DVU1093 0.90 -0.4 1,199,226 - +0.4 1,199,294 - -0.5 1,199,328 - -0.3
Or see this region's nucleotide sequence