Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1092

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1091 and DVU1092 are separated by 217 nucleotidesDVU1092 and DVU1093 are separated by 189 nucleotidesDVU1093 and argH are separated by 132 nucleotides DVU1091: DVU1091 - conserved hypothetical protein (TIGR), at 1,195,859 to 1,196,965 DVU1091 DVU1092: DVU1092 - sodium-dependent symporter family protein (TIGR), at 1,197,183 to 1,198,544 DVU1092 DVU1093: DVU1093 - HAD-superfamily hydrolase, subfamily IA, variant 3 (TIGR), at 1,198,734 to 1,199,264 DVU1093 DVU1094: argH - argininosuccinate lyase (TIGR), at 1,199,397 to 1,200,779 argH Position (kb) 1197 1198 1199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1196.188 kb on - strand, within DVU1091at 1196.196 kb on - strand, within DVU1091at 1196.248 kb on + strand, within DVU1091at 1196.259 kb on + strand, within DVU1091at 1196.300 kb on + strand, within DVU1091at 1196.303 kb on - strand, within DVU1091at 1196.303 kb on - strand, within DVU1091at 1196.430 kb on - strand, within DVU1091at 1196.431 kb on - strand, within DVU1091at 1196.574 kb on + strand, within DVU1091at 1196.592 kb on - strand, within DVU1091at 1196.653 kb on - strand, within DVU1091at 1196.824 kb on - strand, within DVU1091at 1197.033 kb on + strandat 1197.042 kb on - strandat 1197.050 kb on - strandat 1197.181 kb on - strandat 1197.401 kb on + strand, within DVU1092at 1197.401 kb on + strand, within DVU1092at 1197.401 kb on + strand, within DVU1092at 1197.409 kb on - strand, within DVU1092at 1197.409 kb on - strand, within DVU1092at 1197.643 kb on + strand, within DVU1092at 1197.648 kb on + strand, within DVU1092at 1197.651 kb on - strand, within DVU1092at 1197.651 kb on - strand, within DVU1092at 1197.656 kb on - strand, within DVU1092at 1197.656 kb on - strand, within DVU1092at 1197.656 kb on - strand, within DVU1092at 1197.706 kb on + strand, within DVU1092at 1197.771 kb on - strand, within DVU1092at 1197.773 kb on + strand, within DVU1092at 1197.773 kb on + strand, within DVU1092at 1197.773 kb on + strand, within DVU1092at 1197.773 kb on + strand, within DVU1092at 1197.781 kb on - strand, within DVU1092at 1197.789 kb on + strand, within DVU1092at 1197.922 kb on - strand, within DVU1092at 1197.925 kb on + strand, within DVU1092at 1197.957 kb on + strand, within DVU1092at 1197.971 kb on + strand, within DVU1092at 1197.975 kb on + strand, within DVU1092at 1197.998 kb on - strand, within DVU1092at 1198.055 kb on + strand, within DVU1092at 1198.108 kb on - strand, within DVU1092at 1198.196 kb on + strand, within DVU1092at 1198.219 kb on - strand, within DVU1092at 1198.225 kb on - strand, within DVU1092at 1198.241 kb on - strand, within DVU1092at 1198.271 kb on + strand, within DVU1092at 1198.271 kb on + strand, within DVU1092at 1198.271 kb on + strand, within DVU1092at 1198.430 kb on - strandat 1198.468 kb on - strandat 1198.503 kb on - strandat 1198.538 kb on + strandat 1198.663 kb on + strandat 1198.730 kb on - strandat 1198.786 kb on - strandat 1198.848 kb on - strand, within DVU1093at 1198.927 kb on - strand, within DVU1093at 1199.081 kb on - strand, within DVU1093at 1199.211 kb on + strand, within DVU1093at 1199.226 kb on - strandat 1199.294 kb on - strandat 1199.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,196,188 - DVU1091 0.30 -1.0
1,196,196 - DVU1091 0.30 -0.2
1,196,248 + DVU1091 0.35 -1.0
1,196,259 + DVU1091 0.36 +0.3
1,196,300 + DVU1091 0.40 -0.8
1,196,303 - DVU1091 0.40 -1.0
1,196,303 - DVU1091 0.40 -1.7
1,196,430 - DVU1091 0.52 -1.0
1,196,431 - DVU1091 0.52 -1.2
1,196,574 + DVU1091 0.65 -0.2
1,196,592 - DVU1091 0.66 +0.7
1,196,653 - DVU1091 0.72 -1.6
1,196,824 - DVU1091 0.87 -0.3
1,197,033 + -3.0
1,197,042 - +0.2
1,197,050 - +1.5
1,197,181 - +5.3
1,197,401 + DVU1092 0.16 +5.3
1,197,401 + DVU1092 0.16 +6.1
1,197,401 + DVU1092 0.16 +6.3
1,197,409 - DVU1092 0.17 +6.3
1,197,409 - DVU1092 0.17 +6.0
1,197,643 + DVU1092 0.34 +5.8
1,197,648 + DVU1092 0.34 +6.0
1,197,651 - DVU1092 0.34 +4.6
1,197,651 - DVU1092 0.34 +5.7
1,197,656 - DVU1092 0.35 +5.9
1,197,656 - DVU1092 0.35 +5.9
1,197,656 - DVU1092 0.35 +6.0
1,197,706 + DVU1092 0.38 +5.7
1,197,771 - DVU1092 0.43 +5.2
1,197,773 + DVU1092 0.43 +5.9
1,197,773 + DVU1092 0.43 +5.9
1,197,773 + DVU1092 0.43 +6.0
1,197,773 + DVU1092 0.43 +5.8
1,197,781 - DVU1092 0.44 +5.9
1,197,789 + DVU1092 0.44 +5.5
1,197,922 - DVU1092 0.54 +5.9
1,197,925 + DVU1092 0.54 +6.1
1,197,957 + DVU1092 0.57 +6.0
1,197,971 + DVU1092 0.58 +4.4
1,197,975 + DVU1092 0.58 +5.4
1,197,998 - DVU1092 0.60 +6.0
1,198,055 + DVU1092 0.64 +5.8
1,198,108 - DVU1092 0.68 +5.4
1,198,196 + DVU1092 0.74 +5.8
1,198,219 - DVU1092 0.76 +5.9
1,198,225 - DVU1092 0.77 +5.3
1,198,241 - DVU1092 0.78 +5.9
1,198,271 + DVU1092 0.80 +6.2
1,198,271 + DVU1092 0.80 +6.0
1,198,271 + DVU1092 0.80 +6.0
1,198,430 - +5.7
1,198,468 - +5.7
1,198,503 - +5.8
1,198,538 + +2.9
1,198,663 + -0.8
1,198,730 - +0.1
1,198,786 - +1.2
1,198,848 - DVU1093 0.21 +0.2
1,198,927 - DVU1093 0.36 -0.6
1,199,081 - DVU1093 0.65 -0.2
1,199,211 + DVU1093 0.90 -0.4
1,199,226 - +0.4
1,199,294 - -0.5
1,199,328 - -0.3

Or see this region's nucleotide sequence