Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1064

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflrC and aco are separated by 347 nucleotidesaco and DVU1065 are separated by 27 nucleotides DVU1063: flrC - transcriptional regulatory protein (TIGR), at 1,164,167 to 1,165,600 flrC DVU1064: aco - aconitate hydratase, putative (TIGR), at 1,165,948 to 1,167,876 aco DVU1065: DVU1065 - peptidyl-prolyl cis-trans isomerse domain protein (TIGR), at 1,167,904 to 1,169,793 DVU1065 Position (kb) 1165 1166 1167 1168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1164.961 kb on - strand, within flrCat 1164.998 kb on - strand, within flrCat 1165.131 kb on + strand, within flrCat 1165.181 kb on - strand, within flrCat 1165.183 kb on + strand, within flrCat 1165.191 kb on - strand, within flrCat 1165.256 kb on + strand, within flrCat 1165.256 kb on + strand, within flrCat 1165.316 kb on - strand, within flrCat 1165.332 kb on - strand, within flrCat 1165.382 kb on + strand, within flrCat 1165.422 kb on - strand, within flrCat 1165.422 kb on - strand, within flrCat 1165.475 kb on + strandat 1165.492 kb on - strandat 1165.539 kb on - strandat 1165.550 kb on + strandat 1165.727 kb on - strandat 1165.874 kb on + strandat 1165.919 kb on + strandat 1165.927 kb on - strandat 1167.933 kb on + strandat 1167.933 kb on + strandat 1167.941 kb on - strandat 1167.941 kb on - strandat 1167.963 kb on + strandat 1167.967 kb on + strandat 1167.981 kb on + strandat 1168.229 kb on + strand, within DVU1065at 1168.295 kb on - strand, within DVU1065at 1168.406 kb on + strand, within DVU1065at 1168.514 kb on + strand, within DVU1065at 1168.685 kb on + strand, within DVU1065at 1168.685 kb on + strand, within DVU1065at 1168.703 kb on - strand, within DVU1065at 1168.749 kb on + strand, within DVU1065

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,164,961 - flrC DVU1063 0.55 -2.2
1,164,998 - flrC DVU1063 0.58 -3.0
1,165,131 + flrC DVU1063 0.67 -0.6
1,165,181 - flrC DVU1063 0.71 -0.7
1,165,183 + flrC DVU1063 0.71 -0.1
1,165,191 - flrC DVU1063 0.71 -1.2
1,165,256 + flrC DVU1063 0.76 -0.8
1,165,256 + flrC DVU1063 0.76 -1.4
1,165,316 - flrC DVU1063 0.80 -0.9
1,165,332 - flrC DVU1063 0.81 -1.3
1,165,382 + flrC DVU1063 0.85 -1.1
1,165,422 - flrC DVU1063 0.88 -0.3
1,165,422 - flrC DVU1063 0.88 -1.8
1,165,475 + -0.4
1,165,492 - -1.2
1,165,539 - -1.0
1,165,550 + -0.7
1,165,727 - -2.1
1,165,874 + -0.3
1,165,919 + +0.8
1,165,927 - -0.1
1,167,933 + -0.8
1,167,933 + -0.3
1,167,941 - +2.2
1,167,941 - -1.5
1,167,963 + -0.8
1,167,967 + -0.6
1,167,981 + -0.5
1,168,229 + DVU1065 0.17 -0.6
1,168,295 - DVU1065 0.21 -0.4
1,168,406 + DVU1065 0.27 -0.4
1,168,514 + DVU1065 0.32 -0.9
1,168,685 + DVU1065 0.41 +0.0
1,168,685 + DVU1065 0.41 -1.6
1,168,703 - DVU1065 0.42 -0.6
1,168,749 + DVU1065 0.45 -1.2

Or see this region's nucleotide sequence