Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0910

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0908 and DVU0909 are separated by 165 nucleotidesDVU0909 and fliM are separated by 135 nucleotidesfliM and truA are separated by 599 nucleotides DVU0908: DVU0908 - ATP-dependent reduction of co(II)balamin (from data), at 1,001,899 to 1,003,530 DVU0908 DVU0909: DVU0909 - hypothetical protein (TIGR), at 1,003,696 to 1,004,091 DVU0909 DVU0910: fliM - flagellar motor switch protein FliM (TIGR), at 1,004,227 to 1,005,207 fliM DVU0911: truA - tRNA pseudouridine synthase A (TIGR), at 1,005,807 to 1,006,700 truA Position (kb) 1004 1005 1006Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1003.258 kb on + strand, within DVU0908at 1003.324 kb on + strand, within DVU0908at 1003.350 kb on + strand, within DVU0908at 1003.350 kb on + strand, within DVU0908at 1003.429 kb on + strandat 1003.552 kb on + strandat 1003.640 kb on - strandat 1003.786 kb on + strand, within DVU0909at 1003.786 kb on + strand, within DVU0909at 1003.791 kb on + strand, within DVU0909at 1003.794 kb on - strand, within DVU0909at 1003.940 kb on - strand, within DVU0909at 1004.050 kb on - strand, within DVU0909at 1004.109 kb on + strandat 1004.117 kb on + strandat 1004.177 kb on - strandat 1004.335 kb on + strand, within fliMat 1004.452 kb on + strand, within fliMat 1004.645 kb on - strand, within fliMat 1004.679 kb on - strand, within fliMat 1004.679 kb on - strand, within fliMat 1004.688 kb on - strand, within fliMat 1004.690 kb on + strand, within fliMat 1004.768 kb on - strand, within fliMat 1004.903 kb on + strand, within fliMat 1004.945 kb on - strand, within fliMat 1004.979 kb on + strand, within fliMat 1005.058 kb on - strand, within fliMat 1005.065 kb on - strand, within fliMat 1005.083 kb on - strand, within fliMat 1005.121 kb on - strandat 1005.229 kb on - strandat 1005.379 kb on + strandat 1005.482 kb on + strandat 1005.533 kb on - strandat 1005.577 kb on - strandat 1005.680 kb on + strandat 1005.723 kb on - strandat 1005.807 kb on - strandat 1005.963 kb on - strand, within truAat 1006.088 kb on - strand, within truAat 1006.112 kb on - strand, within truAat 1006.112 kb on - strand, within truAat 1006.130 kb on - strand, within truA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,003,258 + DVU0908 0.83 -4.1
1,003,324 + DVU0908 0.87 -2.6
1,003,350 + DVU0908 0.89 -3.1
1,003,350 + DVU0908 0.89 +0.2
1,003,429 + -1.7
1,003,552 + -0.8
1,003,640 - +2.7
1,003,786 + DVU0909 0.23 +1.6
1,003,786 + DVU0909 0.23 +1.3
1,003,791 + DVU0909 0.24 +1.0
1,003,794 - DVU0909 0.25 +1.4
1,003,940 - DVU0909 0.62 +1.6
1,004,050 - DVU0909 0.89 +1.1
1,004,109 + -0.9
1,004,117 + +0.3
1,004,177 - -1.4
1,004,335 + fliM DVU0910 0.11 -0.8
1,004,452 + fliM DVU0910 0.23 -0.8
1,004,645 - fliM DVU0910 0.43 -2.3
1,004,679 - fliM DVU0910 0.46 -0.4
1,004,679 - fliM DVU0910 0.46 -0.7
1,004,688 - fliM DVU0910 0.47 -0.6
1,004,690 + fliM DVU0910 0.47 -0.5
1,004,768 - fliM DVU0910 0.55 -0.6
1,004,903 + fliM DVU0910 0.69 -0.9
1,004,945 - fliM DVU0910 0.73 -0.8
1,004,979 + fliM DVU0910 0.77 +0.9
1,005,058 - fliM DVU0910 0.85 -0.0
1,005,065 - fliM DVU0910 0.85 -1.4
1,005,083 - fliM DVU0910 0.87 -0.5
1,005,121 - -0.0
1,005,229 - -0.0
1,005,379 + -0.9
1,005,482 + -1.0
1,005,533 - -0.4
1,005,577 - -1.1
1,005,680 + -0.8
1,005,723 - -0.7
1,005,807 - -0.3
1,005,963 - truA DVU0911 0.17 +2.3
1,006,088 - truA DVU0911 0.31 -0.6
1,006,112 - truA DVU0911 0.34 -1.7
1,006,112 - truA DVU0911 0.34 -0.6
1,006,130 - truA DVU0911 0.36 +0.7

Or see this region's nucleotide sequence