Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroC and recD are separated by 172 nucleotides recD and DVU0896 are separated by 9 nucleotides
DVU0894: aroC - chorismate synthase (TIGR), at 984,956 to 986,020
aroC
DVU0895: recD - helicase, RecD/TraA family (TIGR), at 986,193 to 988,421
recD
DVU0896: DVU0896 - lipoprotein, NLP/P60 family (TIGR), at 988,431 to 989,825
DVU0896
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.253 kb on + strand, within aroC at 985.704 kb on - strand, within aroC at 986.055 kb on + strand at 986.063 kb on - strand at 986.063 kb on - strand at 986.063 kb on - strand at 986.063 kb on - strand at 986.067 kb on + strand at 986.067 kb on + strand at 986.075 kb on - strand at 986.082 kb on + strand at 986.117 kb on + strand at 986.134 kb on + strand at 986.160 kb on + strand at 986.196 kb on - strand at 986.218 kb on + strand at 986.302 kb on - strand at 986.302 kb on - strand at 986.304 kb on - strand at 986.338 kb on - strand at 986.417 kb on + strand, within recD at 986.458 kb on - strand, within recD at 986.466 kb on - strand, within recD at 986.508 kb on - strand, within recD at 986.510 kb on + strand, within recD at 986.518 kb on - strand, within recD at 986.518 kb on - strand, within recD at 986.579 kb on + strand, within recD at 986.757 kb on - strand, within recD at 986.861 kb on + strand, within recD at 986.890 kb on - strand, within recD at 986.902 kb on - strand, within recD at 986.945 kb on - strand, within recD at 986.955 kb on - strand, within recD at 987.026 kb on + strand, within recD at 987.026 kb on + strand, within recD at 987.073 kb on - strand, within recD at 987.105 kb on + strand, within recD at 987.136 kb on - strand, within recD at 987.142 kb on - strand, within recD at 987.142 kb on - strand, within recD at 987.173 kb on + strand, within recD at 987.180 kb on + strand, within recD at 987.252 kb on + strand, within recD at 987.374 kb on + strand, within recD at 987.433 kb on + strand, within recD at 987.479 kb on - strand, within recD at 987.504 kb on + strand, within recD at 987.512 kb on + strand, within recD at 987.567 kb on - strand, within recD at 987.572 kb on + strand, within recD at 987.618 kb on + strand, within recD at 987.871 kb on - strand, within recD at 987.945 kb on - strand, within recD at 987.948 kb on + strand, within recD at 988.052 kb on - strand, within recD at 988.121 kb on - strand, within recD at 988.177 kb on - strand, within recD at 988.194 kb on + strand, within recD at 988.195 kb on + strand, within recD at 988.203 kb on - strand at 988.203 kb on - strand at 988.243 kb on - strand at 988.291 kb on - strand at 988.348 kb on - strand at 988.381 kb on + strand at 988.381 kb on + strand at 988.381 kb on + strand at 988.430 kb on + strand at 988.523 kb on + strand at 988.559 kb on - strand at 988.560 kb on + strand at 988.601 kb on - strand, within DVU0896 at 988.654 kb on - strand, within DVU0896 at 988.659 kb on - strand, within DVU0896 at 988.659 kb on - strand, within DVU0896 at 988.664 kb on - strand, within DVU0896 at 988.764 kb on - strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.848 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.952 kb on + strand, within DVU0896 at 988.953 kb on + strand, within DVU0896 at 988.959 kb on + strand, within DVU0896 at 988.960 kb on - strand, within DVU0896 at 988.961 kb on - strand, within DVU0896 at 989.021 kb on - strand, within DVU0896 at 989.032 kb on + strand, within DVU0896 at 989.040 kb on - strand, within DVU0896 at 989.142 kb on - strand, within DVU0896 at 989.153 kb on + strand, within DVU0896 at 989.173 kb on - strand, within DVU0896 at 989.212 kb on - strand, within DVU0896 at 989.253 kb on + strand, within DVU0896 at 989.256 kb on - strand, within DVU0896 at 989.261 kb on - strand, within DVU0896 at 989.274 kb on + strand, within DVU0896 at 989.295 kb on - strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.390 kb on + strand, within DVU0896
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 985,253 + aroC DVU0894 0.28 -0.3 985,704 - aroC DVU0894 0.70 -0.8 986,055 + +0.9 986,063 - -0.1 986,063 - -1.8 986,063 - -0.3 986,063 - -0.9 986,067 + -0.0 986,067 + -0.0 986,075 - -0.1 986,082 + -0.1 986,117 + +1.6 986,134 + +1.5 986,160 + +0.2 986,196 - -0.8 986,218 + -0.3 986,302 - -0.6 986,302 - -1.7 986,304 - -0.1 986,338 - -1.7 986,417 + recD DVU0895 0.10 +0.8 986,458 - recD DVU0895 0.12 -0.1 986,466 - recD DVU0895 0.12 -1.3 986,508 - recD DVU0895 0.14 -1.0 986,510 + recD DVU0895 0.14 -1.2 986,518 - recD DVU0895 0.15 -1.5 986,518 - recD DVU0895 0.15 -1.1 986,579 + recD DVU0895 0.17 -1.4 986,757 - recD DVU0895 0.25 -1.1 986,861 + recD DVU0895 0.30 -0.4 986,890 - recD DVU0895 0.31 +0.2 986,902 - recD DVU0895 0.32 -1.5 986,945 - recD DVU0895 0.34 +0.2 986,955 - recD DVU0895 0.34 -2.6 987,026 + recD DVU0895 0.37 +0.5 987,026 + recD DVU0895 0.37 -1.4 987,073 - recD DVU0895 0.39 -0.9 987,105 + recD DVU0895 0.41 -1.4 987,136 - recD DVU0895 0.42 +0.9 987,142 - recD DVU0895 0.43 +0.5 987,142 - recD DVU0895 0.43 -0.5 987,173 + recD DVU0895 0.44 -1.5 987,180 + recD DVU0895 0.44 -1.4 987,252 + recD DVU0895 0.48 -0.2 987,374 + recD DVU0895 0.53 -0.1 987,433 + recD DVU0895 0.56 -1.4 987,479 - recD DVU0895 0.58 +0.2 987,504 + recD DVU0895 0.59 -0.3 987,512 + recD DVU0895 0.59 +0.1 987,567 - recD DVU0895 0.62 -1.8 987,572 + recD DVU0895 0.62 -0.5 987,618 + recD DVU0895 0.64 +1.2 987,871 - recD DVU0895 0.75 -0.3 987,945 - recD DVU0895 0.79 -2.1 987,948 + recD DVU0895 0.79 -0.5 988,052 - recD DVU0895 0.83 -0.1 988,121 - recD DVU0895 0.86 -0.7 988,177 - recD DVU0895 0.89 -0.9 988,194 + recD DVU0895 0.90 +0.9 988,195 + recD DVU0895 0.90 -0.5 988,203 - +0.2 988,203 - -0.9 988,243 - -2.8 988,291 - -0.8 988,348 - -0.1 988,381 + -0.1 988,381 + -1.1 988,381 + -1.3 988,430 + -0.5 988,523 + -0.7 988,559 - -0.4 988,560 + -1.0 988,601 - DVU0896 0.12 -0.5 988,654 - DVU0896 0.16 -0.6 988,659 - DVU0896 0.16 -1.2 988,659 - DVU0896 0.16 -1.1 988,664 - DVU0896 0.17 -0.1 988,764 - DVU0896 0.24 -0.1 988,847 + DVU0896 0.30 -1.1 988,847 + DVU0896 0.30 -0.1 988,847 + DVU0896 0.30 +0.2 988,848 - DVU0896 0.30 +0.5 988,855 - DVU0896 0.30 -0.8 988,855 - DVU0896 0.30 +0.1 988,932 + DVU0896 0.36 -1.4 988,932 + DVU0896 0.36 -0.6 988,952 + DVU0896 0.37 -0.6 988,953 + DVU0896 0.37 -0.4 988,959 + DVU0896 0.38 -0.5 988,960 - DVU0896 0.38 -0.2 988,961 - DVU0896 0.38 -0.1 989,021 - DVU0896 0.42 -1.4 989,032 + DVU0896 0.43 +2.5 989,040 - DVU0896 0.44 -1.2 989,142 - DVU0896 0.51 -0.5 989,153 + DVU0896 0.52 +0.0 989,173 - DVU0896 0.53 -0.9 989,212 - DVU0896 0.56 +0.1 989,253 + DVU0896 0.59 -1.4 989,256 - DVU0896 0.59 -0.6 989,261 - DVU0896 0.59 -0.6 989,274 + DVU0896 0.60 -0.8 989,295 - DVU0896 0.62 -1.2 989,390 + DVU0896 0.69 +0.3 989,390 + DVU0896 0.69 -0.4
Or see this region's nucleotide sequence