Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1318 and Rru_A1319 are separated by 515 nucleotides Rru_A1319 and Rru_A1320 are separated by 191 nucleotides
Rru_A1318: Rru_A1318 - hypothetical protein (NCBI), at 1,556,456 to 1,556,872
_A1318
Rru_A1319: Rru_A1319 - Triphosphoribosyl-dephospho-CoA synthase (NCBI), at 1,557,388 to 1,558,311
_A1319
Rru_A1320: Rru_A1320 - Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI), at 1,558,503 to 1,559,714
_A1320
Position (kb)
1557
1558
1559 Strain fitness (log2 ratio)
-1
0
1 at 1556.415 kb on + strand at 1556.416 kb on - strand at 1556.461 kb on + strand at 1556.462 kb on - strand at 1556.462 kb on - strand at 1556.540 kb on + strand, within Rru_A1318 at 1556.541 kb on - strand, within Rru_A1318 at 1556.541 kb on - strand, within Rru_A1318 at 1556.541 kb on - strand, within Rru_A1318 at 1556.575 kb on + strand, within Rru_A1318 at 1556.604 kb on + strand, within Rru_A1318 at 1556.604 kb on + strand, within Rru_A1318 at 1556.604 kb on + strand, within Rru_A1318 at 1556.605 kb on - strand, within Rru_A1318 at 1556.605 kb on - strand, within Rru_A1318 at 1556.866 kb on + strand at 1556.867 kb on - strand at 1556.867 kb on - strand at 1556.867 kb on - strand at 1556.978 kb on + strand at 1556.978 kb on + strand at 1556.978 kb on + strand at 1556.978 kb on + strand at 1556.979 kb on - strand at 1556.994 kb on + strand at 1557.048 kb on - strand at 1557.689 kb on - strand, within Rru_A1319 at 1557.727 kb on - strand, within Rru_A1319 at 1557.927 kb on + strand, within Rru_A1319 at 1558.225 kb on - strand at 1558.225 kb on - strand at 1558.382 kb on + strand at 1558.393 kb on + strand at 1558.394 kb on - strand at 1558.397 kb on + strand at 1558.397 kb on + strand at 1558.614 kb on + strand at 1558.615 kb on - strand at 1558.615 kb on - strand at 1558.625 kb on + strand, within Rru_A1320 at 1558.625 kb on + strand, within Rru_A1320 at 1558.626 kb on - strand, within Rru_A1320 at 1558.626 kb on - strand, within Rru_A1320 at 1558.769 kb on + strand, within Rru_A1320 at 1558.769 kb on + strand, within Rru_A1320 at 1558.770 kb on - strand, within Rru_A1320 at 1558.800 kb on + strand, within Rru_A1320 at 1558.801 kb on - strand, within Rru_A1320 at 1558.801 kb on - strand, within Rru_A1320 at 1558.956 kb on + strand, within Rru_A1320 at 1558.957 kb on - strand, within Rru_A1320 at 1558.959 kb on + strand, within Rru_A1320 at 1558.959 kb on + strand, within Rru_A1320 at 1558.959 kb on + strand, within Rru_A1320 at 1558.959 kb on + strand, within Rru_A1320 at 1558.959 kb on + strand, within Rru_A1320 at 1558.960 kb on - strand, within Rru_A1320 at 1558.960 kb on - strand, within Rru_A1320 at 1558.960 kb on - strand, within Rru_A1320 at 1558.960 kb on - strand, within Rru_A1320 at 1558.960 kb on - strand, within Rru_A1320 at 1558.960 kb on - strand, within Rru_A1320 at 1559.085 kb on + strand, within Rru_A1320 at 1559.085 kb on + strand, within Rru_A1320 at 1559.086 kb on - strand, within Rru_A1320 at 1559.086 kb on - strand, within Rru_A1320 at 1559.086 kb on - strand, within Rru_A1320 at 1559.091 kb on + strand, within Rru_A1320 at 1559.091 kb on + strand, within Rru_A1320 at 1559.106 kb on + strand, within Rru_A1320 at 1559.107 kb on - strand, within Rru_A1320 at 1559.121 kb on + strand, within Rru_A1320 at 1559.151 kb on + strand, within Rru_A1320 at 1559.151 kb on + strand, within Rru_A1320 at 1559.151 kb on + strand, within Rru_A1320
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 1,556,415 + -0.4 1,556,416 - +0.1 1,556,461 + +0.1 1,556,462 - -1.3 1,556,462 - +0.1 1,556,540 + Rru_A1318 0.20 +0.0 1,556,541 - Rru_A1318 0.20 -0.9 1,556,541 - Rru_A1318 0.20 -0.2 1,556,541 - Rru_A1318 0.20 +0.5 1,556,575 + Rru_A1318 0.29 +0.3 1,556,604 + Rru_A1318 0.35 -0.2 1,556,604 + Rru_A1318 0.35 +0.7 1,556,604 + Rru_A1318 0.35 +0.3 1,556,605 - Rru_A1318 0.36 +0.5 1,556,605 - Rru_A1318 0.36 -0.3 1,556,866 + -0.2 1,556,867 - +0.2 1,556,867 - +0.1 1,556,867 - +0.3 1,556,978 + -0.1 1,556,978 + -0.1 1,556,978 + -0.0 1,556,978 + -0.1 1,556,979 - -0.1 1,556,994 + +1.0 1,557,048 - +0.1 1,557,689 - Rru_A1319 0.33 -0.1 1,557,727 - Rru_A1319 0.37 -0.9 1,557,927 + Rru_A1319 0.58 -1.1 1,558,225 - +0.2 1,558,225 - +0.1 1,558,382 + +0.4 1,558,393 + +0.7 1,558,394 - -0.1 1,558,397 + -0.3 1,558,397 + -0.6 1,558,614 + +0.3 1,558,615 - -1.5 1,558,615 - +0.4 1,558,625 + Rru_A1320 0.10 -0.6 1,558,625 + Rru_A1320 0.10 +0.2 1,558,626 - Rru_A1320 0.10 +0.2 1,558,626 - Rru_A1320 0.10 +0.8 1,558,769 + Rru_A1320 0.22 -0.5 1,558,769 + Rru_A1320 0.22 +0.8 1,558,770 - Rru_A1320 0.22 +1.5 1,558,800 + Rru_A1320 0.25 +0.1 1,558,801 - Rru_A1320 0.25 +0.3 1,558,801 - Rru_A1320 0.25 -0.5 1,558,956 + Rru_A1320 0.37 -0.2 1,558,957 - Rru_A1320 0.37 +0.0 1,558,959 + Rru_A1320 0.38 +0.5 1,558,959 + Rru_A1320 0.38 +0.3 1,558,959 + Rru_A1320 0.38 -0.2 1,558,959 + Rru_A1320 0.38 -0.3 1,558,959 + Rru_A1320 0.38 -0.7 1,558,960 - Rru_A1320 0.38 +0.9 1,558,960 - Rru_A1320 0.38 -1.0 1,558,960 - Rru_A1320 0.38 +0.2 1,558,960 - Rru_A1320 0.38 -0.1 1,558,960 - Rru_A1320 0.38 -0.4 1,558,960 - Rru_A1320 0.38 -0.5 1,559,085 + Rru_A1320 0.48 -0.1 1,559,085 + Rru_A1320 0.48 +1.0 1,559,086 - Rru_A1320 0.48 -0.1 1,559,086 - Rru_A1320 0.48 -0.2 1,559,086 - Rru_A1320 0.48 -0.2 1,559,091 + Rru_A1320 0.49 +0.0 1,559,091 + Rru_A1320 0.49 -0.2 1,559,106 + Rru_A1320 0.50 -0.0 1,559,107 - Rru_A1320 0.50 +0.4 1,559,121 + Rru_A1320 0.51 -0.1 1,559,151 + Rru_A1320 0.53 -0.4 1,559,151 + Rru_A1320 0.53 +0.4 1,559,151 + Rru_A1320 0.53 +0.2
Or see this region's nucleotide sequence