Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0929

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0927 and Rru_A0928 are separated by 107 nucleotidesRru_A0928 and Rru_A0929 are separated by 486 nucleotidesRru_A0929 and Rru_A0930 are separated by 193 nucleotides Rru_A0927: Rru_A0927 - luciferase-like (NCBI), at 1,103,444 to 1,104,445 _A0927 Rru_A0928: Rru_A0928 - Hydrogenase expression/synthesis, HypA (NCBI), at 1,104,553 to 1,104,939 _A0928 Rru_A0929: Rru_A0929 - hypothetical protein (NCBI), at 1,105,426 to 1,105,827 _A0929 Rru_A0930: Rru_A0930 - Iron-containing alcohol dehydrogenase (NCBI), at 1,106,021 to 1,107,172 _A0930 Position (kb) 1105 1106Strain fitness (log2 ratio) -2 -1 0 1at 1104.619 kb on + strand, within Rru_A0928at 1104.619 kb on + strand, within Rru_A0928at 1104.620 kb on - strand, within Rru_A0928at 1104.955 kb on - strandat 1105.022 kb on + strandat 1105.022 kb on + strandat 1105.022 kb on + strandat 1105.022 kb on + strandat 1105.023 kb on - strandat 1105.218 kb on + strandat 1105.218 kb on + strandat 1105.218 kb on + strandat 1105.218 kb on + strandat 1105.218 kb on + strandat 1105.219 kb on - strandat 1105.219 kb on - strandat 1105.219 kb on - strandat 1105.219 kb on - strandat 1105.219 kb on - strandat 1105.223 kb on - strandat 1105.277 kb on + strandat 1105.339 kb on + strandat 1105.340 kb on - strandat 1105.440 kb on + strandat 1105.485 kb on + strand, within Rru_A0929at 1105.485 kb on + strand, within Rru_A0929at 1105.485 kb on + strand, within Rru_A0929at 1105.486 kb on - strand, within Rru_A0929at 1105.825 kb on + strandat 1105.825 kb on + strandat 1105.826 kb on - strandat 1105.826 kb on - strandat 1105.929 kb on - strandat 1106.355 kb on + strand, within Rru_A0930at 1106.355 kb on + strand, within Rru_A0930at 1106.355 kb on + strand, within Rru_A0930at 1106.355 kb on + strand, within Rru_A0930at 1106.355 kb on + strand, within Rru_A0930at 1106.355 kb on + strand, within Rru_A0930at 1106.439 kb on + strand, within Rru_A0930at 1106.439 kb on + strand, within Rru_A0930at 1106.439 kb on + strand, within Rru_A0930at 1106.440 kb on - strand, within Rru_A0930at 1106.440 kb on - strand, within Rru_A0930at 1106.565 kb on + strand, within Rru_A0930at 1106.565 kb on + strand, within Rru_A0930at 1106.565 kb on + strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.566 kb on - strand, within Rru_A0930at 1106.814 kb on + strand, within Rru_A0930at 1106.815 kb on - strand, within Rru_A0930at 1106.815 kb on - strand, within Rru_A0930

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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1,104,619 + Rru_A0928 0.17 -0.1
1,104,619 + Rru_A0928 0.17 -0.4
1,104,620 - Rru_A0928 0.17 -0.1
1,104,955 - +0.3
1,105,022 + +0.1
1,105,022 + +0.2
1,105,022 + -0.4
1,105,022 + -0.4
1,105,023 - +0.0
1,105,218 + +0.1
1,105,218 + +0.1
1,105,218 + +0.6
1,105,218 + -0.7
1,105,218 + +0.6
1,105,219 - +1.1
1,105,219 - -0.2
1,105,219 - -2.1
1,105,219 - -0.4
1,105,219 - -1.4
1,105,223 - -0.0
1,105,277 + +0.5
1,105,339 + -0.3
1,105,340 - -0.4
1,105,440 + -2.1
1,105,485 + Rru_A0929 0.15 +0.4
1,105,485 + Rru_A0929 0.15 -0.6
1,105,485 + Rru_A0929 0.15 +0.3
1,105,486 - Rru_A0929 0.15 +0.1
1,105,825 + -0.1
1,105,825 + -0.4
1,105,826 - -0.0
1,105,826 - -0.7
1,105,929 - -0.2
1,106,355 + Rru_A0930 0.29 -0.1
1,106,355 + Rru_A0930 0.29 -0.9
1,106,355 + Rru_A0930 0.29 +0.1
1,106,355 + Rru_A0930 0.29 -0.2
1,106,355 + Rru_A0930 0.29 -0.3
1,106,355 + Rru_A0930 0.29 +0.1
1,106,439 + Rru_A0930 0.36 +0.2
1,106,439 + Rru_A0930 0.36 +0.5
1,106,439 + Rru_A0930 0.36 +0.2
1,106,440 - Rru_A0930 0.36 -0.8
1,106,440 - Rru_A0930 0.36 +0.4
1,106,565 + Rru_A0930 0.47 -0.9
1,106,565 + Rru_A0930 0.47 -0.2
1,106,565 + Rru_A0930 0.47 +1.5
1,106,566 - Rru_A0930 0.47 -0.3
1,106,566 - Rru_A0930 0.47 -0.1
1,106,566 - Rru_A0930 0.47 -0.9
1,106,566 - Rru_A0930 0.47 -0.3
1,106,566 - Rru_A0930 0.47 +0.2
1,106,566 - Rru_A0930 0.47 -0.1
1,106,566 - Rru_A0930 0.47 -1.3
1,106,814 + Rru_A0930 0.69 -0.7
1,106,815 - Rru_A0930 0.69 -0.2
1,106,815 - Rru_A0930 0.69 +0.3

Or see this region's nucleotide sequence