Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0836

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11723524 and 11438770 are separated by 0 nucleotides11438770 and 11581133 overlap by 34 nucleotides11581133 and 11723525 overlap by 34 nucleotides11723525 and 11438771 are separated by 0 nucleotides11438771 and 11581134 overlap by 32 nucleotides11581134 and 11723526 overlap by 32 nucleotides11723526 and 11438772 are separated by 0 nucleotides11438772 and 11581135 overlap by 34 nucleotides11581135 and 11723527 overlap by 34 nucleotides11723527 and 11438773 are separated by 0 nucleotides11438773 and 11581136 overlap by 32 nucleotides11581136 and 11723528 overlap by 32 nucleotides11723528 and 11438774 are separated by 0 nucleotides11438774 and 11581137 overlap by 34 nucleotides11581137 and 11723529 overlap by 34 nucleotides11723529 and 11438775 are separated by 0 nucleotides11438775 and 11581138 overlap by 32 nucleotides11581138 and 11723530 overlap by 32 nucleotides11723530 and 11438776 are separated by 0 nucleotides11438776 and 11581139 overlap by 34 nucleotides11581139 and 11723531 overlap by 34 nucleotides11723531 and 11438777 are separated by 0 nucleotides11438777 and 11581140 overlap by 32 nucleotides11581140 and 11723532 overlap by 32 nucleotides11723532 and 11438778 are separated by 0 nucleotides11438778 and 11581141 overlap by 34 nucleotides11581141 and 11723533 overlap by 34 nucleotides11723533 and 11438779 are separated by 0 nucleotides11438779 and 11581142 overlap by 32 nucleotides11581142 and 11723534 overlap by 32 nucleotides11723534 and 11438780 are separated by 0 nucleotides11438780 and 11581143 overlap by 34 nucleotides11581143 and 11723535 overlap by 34 nucleotides11723535 and 11438781 are separated by 0 nucleotides11438781 and 11581144 overlap by 32 nucleotides11581144 and 11723536 overlap by 32 nucleotides11723536 and 11438782 are separated by 0 nucleotides11438782 and 11581145 overlap by 34 nucleotides11581145 and 11723537 overlap by 34 nucleotides11723537 and 11438783 are separated by 0 nucleotides11438783 and 11581146 overlap by 32 nucleotides11581146 and 11723538 overlap by 32 nucleotides11723538 and Rru_A0836 are separated by 533 nucleotidesRru_A0836 and Rru_A0837 overlap by 8 nucleotides 11438769 - no description, at 991,354 to 991,385 11438769 11581132 - no description, at 991,354 to 991,385 11581132 11723524 - no description, at 991,354 to 991,385 11723524 11438770 - no description, at 991,386 to 991,419 11438770 11581133 - no description, at 991,386 to 991,419 11581133 11723525 - no description, at 991,386 to 991,419 11723525 11438771 - no description, at 991,420 to 991,451 11438771 11581134 - no description, at 991,420 to 991,451 11581134 11723526 - no description, at 991,420 to 991,451 11723526 11438772 - no description, at 991,452 to 991,485 11438772 11581135 - no description, at 991,452 to 991,485 11581135 11723527 - no description, at 991,452 to 991,485 11723527 11438773 - no description, at 991,486 to 991,517 11438773 11581136 - no description, at 991,486 to 991,517 11581136 11723528 - no description, at 991,486 to 991,517 11723528 11438774 - no description, at 991,518 to 991,551 11438774 11581137 - no description, at 991,518 to 991,551 11581137 11723529 - no description, at 991,518 to 991,551 11723529 11438775 - no description, at 991,552 to 991,583 11438775 11581138 - no description, at 991,552 to 991,583 11581138 11723530 - no description, at 991,552 to 991,583 11723530 11438776 - no description, at 991,584 to 991,617 11438776 11581139 - no description, at 991,584 to 991,617 11581139 11723531 - no description, at 991,584 to 991,617 11723531 11438777 - no description, at 991,618 to 991,649 11438777 11581140 - no description, at 991,618 to 991,649 11581140 11723532 - no description, at 991,618 to 991,649 11723532 11438778 - no description, at 991,650 to 991,683 11438778 11581141 - no description, at 991,650 to 991,683 11581141 11723533 - no description, at 991,650 to 991,683 11723533 11438779 - no description, at 991,684 to 991,715 11438779 11581142 - no description, at 991,684 to 991,715 11581142 11723534 - no description, at 991,684 to 991,715 11723534 11438780 - no description, at 991,716 to 991,749 11438780 11581143 - no description, at 991,716 to 991,749 11581143 11723535 - no description, at 991,716 to 991,749 11723535 11438781 - no description, at 991,750 to 991,781 11438781 11581144 - no description, at 991,750 to 991,781 11581144 11723536 - no description, at 991,750 to 991,781 11723536 11438782 - no description, at 991,782 to 991,815 11438782 11581145 - no description, at 991,782 to 991,815 11581145 11723537 - no description, at 991,782 to 991,815 11723537 11438783 - no description, at 991,816 to 991,847 11438783 11581146 - no description, at 991,816 to 991,847 11581146 11723538 - no description, at 991,816 to 991,847 11723538 Rru_A0836: Rru_A0836 - hypothetical protein (NCBI), at 992,381 to 992,809 _A0836 Rru_A0837: Rru_A0837 - Leucine-rich repeat (NCBI), at 992,802 to 996,059 _A0837 Position (kb) 992 993Strain fitness (log2 ratio) -1 0 1 2 3at 991.738 kb on + strandat 991.738 kb on + strandat 991.793 kb on + strandat 991.800 kb on + strandat 991.800 kb on + strandat 991.800 kb on + strandat 991.804 kb on + strandat 991.804 kb on + strandat 991.804 kb on + strandat 991.804 kb on + strandat 991.908 kb on + strandat 991.908 kb on + strandat 991.908 kb on + strandat 991.909 kb on - strandat 991.909 kb on - strandat 991.909 kb on - strandat 991.964 kb on + strandat 991.964 kb on + strandat 991.965 kb on - strandat 991.965 kb on - strandat 991.965 kb on - strandat 992.127 kb on - strandat 992.132 kb on - strandat 992.146 kb on + strandat 992.332 kb on + strandat 992.383 kb on - strandat 992.383 kb on - strandat 992.452 kb on - strand, within Rru_A0836at 992.486 kb on + strand, within Rru_A0836at 992.486 kb on + strand, within Rru_A0836at 992.601 kb on + strand, within Rru_A0836at 992.601 kb on + strand, within Rru_A0836at 992.602 kb on - strand, within Rru_A0836at 992.649 kb on + strand, within Rru_A0836at 992.649 kb on + strand, within Rru_A0836at 992.840 kb on + strandat 993.002 kb on - strandat 993.139 kb on + strand, within Rru_A0837at 993.158 kb on + strand, within Rru_A0837at 993.159 kb on - strand, within Rru_A0837at 993.159 kb on - strand, within Rru_A0837at 993.159 kb on - strand, within Rru_A0837at 993.159 kb on - strand, within Rru_A0837at 993.163 kb on - strand, within Rru_A0837at 993.214 kb on + strand, within Rru_A0837at 993.323 kb on - strand, within Rru_A0837at 993.626 kb on - strand, within Rru_A0837at 993.700 kb on + strand, within Rru_A0837at 993.700 kb on + strand, within Rru_A0837at 993.784 kb on + strand, within Rru_A0837at 993.784 kb on + strand, within Rru_A0837at 993.784 kb on + strand, within Rru_A0837at 993.784 kb on + strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837at 993.785 kb on - strand, within Rru_A0837

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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991,738 + +1.3
991,738 + +0.6
991,793 + -0.0
991,800 + +0.0
991,800 + +0.1
991,800 + +0.0
991,804 + +0.5
991,804 + -0.2
991,804 + -0.3
991,804 + -0.4
991,908 + -0.4
991,908 + -0.4
991,908 + +0.1
991,909 - +0.1
991,909 - -0.2
991,909 - +0.1
991,964 + +0.0
991,964 + -0.6
991,965 - -0.2
991,965 - -0.3
991,965 - +0.0
992,127 - -0.4
992,132 - -1.7
992,146 + -0.4
992,332 + +0.1
992,383 - +0.1
992,383 - +0.8
992,452 - Rru_A0836 0.17 -0.0
992,486 + Rru_A0836 0.24 +0.2
992,486 + Rru_A0836 0.24 -0.1
992,601 + Rru_A0836 0.51 +0.0
992,601 + Rru_A0836 0.51 +0.2
992,602 - Rru_A0836 0.52 +1.4
992,649 + Rru_A0836 0.62 +0.1
992,649 + Rru_A0836 0.62 -0.5
992,840 + +0.6
993,002 - +0.1
993,139 + Rru_A0837 0.10 -0.0
993,158 + Rru_A0837 0.11 +0.6
993,159 - Rru_A0837 0.11 -0.6
993,159 - Rru_A0837 0.11 -0.3
993,159 - Rru_A0837 0.11 +0.9
993,159 - Rru_A0837 0.11 +0.3
993,163 - Rru_A0837 0.11 +0.4
993,214 + Rru_A0837 0.13 +0.2
993,323 - Rru_A0837 0.16 -1.0
993,626 - Rru_A0837 0.25 +2.9
993,700 + Rru_A0837 0.28 -0.2
993,700 + Rru_A0837 0.28 +0.5
993,784 + Rru_A0837 0.30 +0.1
993,784 + Rru_A0837 0.30 +0.8
993,784 + Rru_A0837 0.30 -0.1
993,784 + Rru_A0837 0.30 -0.4
993,785 - Rru_A0837 0.30 -0.0
993,785 - Rru_A0837 0.30 +0.2
993,785 - Rru_A0837 0.30 -0.7
993,785 - Rru_A0837 0.30 +0.6
993,785 - Rru_A0837 0.30 -0.5
993,785 - Rru_A0837 0.30 -0.2
993,785 - Rru_A0837 0.30 -0.1
993,785 - Rru_A0837 0.30 -0.2
993,785 - Rru_A0837 0.30 -0.2

Or see this region's nucleotide sequence