Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0800 and Rru_A0801 overlap by 4 nucleotides Rru_A0801 and Rru_A0802 are separated by 6 nucleotides Rru_A0802 and Rru_A0803 overlap by 1 nucleotides
Rru_A0800: Rru_A0800 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 955,362 to 956,432
_A0800
Rru_A0801: Rru_A0801 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 956,429 to 957,319
_A0801
Rru_A0802: Rru_A0802 - ABC transporter component (NCBI), at 957,326 to 958,156
_A0802
Rru_A0803: Rru_A0803 - ABC transporter component (NCBI), at 958,156 to 958,914
_A0803
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.799 kb on + strand, within Rru_A0800 at 955.825 kb on + strand, within Rru_A0800 at 955.825 kb on + strand, within Rru_A0800 at 955.825 kb on + strand, within Rru_A0800 at 955.826 kb on - strand, within Rru_A0800 at 955.826 kb on - strand, within Rru_A0800 at 955.848 kb on + strand, within Rru_A0800 at 955.896 kb on + strand, within Rru_A0800 at 955.945 kb on - strand, within Rru_A0800 at 956.062 kb on - strand, within Rru_A0800 at 956.064 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.128 kb on - strand, within Rru_A0800 at 956.128 kb on - strand, within Rru_A0800 at 956.128 kb on - strand, within Rru_A0800 at 956.232 kb on + strand, within Rru_A0800 at 956.232 kb on + strand, within Rru_A0800 at 956.232 kb on + strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.603 kb on + strand, within Rru_A0801 at 956.690 kb on - strand, within Rru_A0801 at 956.830 kb on + strand, within Rru_A0801 at 956.831 kb on - strand, within Rru_A0801 at 957.331 kb on + strand at 957.331 kb on + strand at 957.331 kb on + strand at 957.331 kb on + strand at 957.332 kb on - strand at 957.332 kb on - strand at 957.332 kb on - strand at 957.499 kb on + strand, within Rru_A0802 at 957.500 kb on - strand, within Rru_A0802 at 957.681 kb on - strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.774 kb on - strand, within Rru_A0802 at 957.774 kb on - strand, within Rru_A0802 at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.077 kb on - strand at 958.077 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 955,799 + Rru_A0800 0.41 -0.2 955,825 + Rru_A0800 0.43 -0.6 955,825 + Rru_A0800 0.43 +0.2 955,825 + Rru_A0800 0.43 -0.4 955,826 - Rru_A0800 0.43 +0.3 955,826 - Rru_A0800 0.43 +0.8 955,848 + Rru_A0800 0.45 -0.1 955,896 + Rru_A0800 0.50 -0.7 955,945 - Rru_A0800 0.54 +0.3 956,062 - Rru_A0800 0.65 -0.1 956,064 + Rru_A0800 0.66 -1.2 956,127 + Rru_A0800 0.71 -0.8 956,127 + Rru_A0800 0.71 -0.4 956,127 + Rru_A0800 0.71 +2.1 956,127 + Rru_A0800 0.71 +0.5 956,127 + Rru_A0800 0.71 +0.1 956,128 - Rru_A0800 0.72 +0.2 956,128 - Rru_A0800 0.72 -0.0 956,128 - Rru_A0800 0.72 +0.1 956,232 + Rru_A0800 0.81 -0.7 956,232 + Rru_A0800 0.81 +0.3 956,232 + Rru_A0800 0.81 -0.2 956,233 - Rru_A0800 0.81 +1.6 956,233 - Rru_A0800 0.81 +1.3 956,233 - Rru_A0800 0.81 +0.1 956,233 - Rru_A0800 0.81 -0.2 956,298 + Rru_A0800 0.87 -0.3 956,298 + Rru_A0800 0.87 -0.2 956,298 + Rru_A0800 0.87 -0.5 956,298 + Rru_A0800 0.87 +0.1 956,299 - Rru_A0800 0.87 +1.3 956,299 - Rru_A0800 0.87 -0.0 956,299 - Rru_A0800 0.87 -0.6 956,299 - Rru_A0800 0.87 -0.1 956,299 - Rru_A0800 0.87 +0.2 956,299 - Rru_A0800 0.87 -0.3 956,603 + Rru_A0801 0.20 +0.3 956,690 - Rru_A0801 0.29 +0.3 956,830 + Rru_A0801 0.45 -1.8 956,831 - Rru_A0801 0.45 +2.3 957,331 + -0.7 957,331 + +0.2 957,331 + -0.2 957,331 + -0.6 957,332 - -0.6 957,332 - -0.1 957,332 - -0.2 957,499 + Rru_A0802 0.21 +0.2 957,500 - Rru_A0802 0.21 -0.7 957,681 - Rru_A0802 0.43 -1.1 957,773 + Rru_A0802 0.54 -0.2 957,773 + Rru_A0802 0.54 +0.3 957,773 + Rru_A0802 0.54 -0.2 957,773 + Rru_A0802 0.54 +0.4 957,774 - Rru_A0802 0.54 +0.2 957,774 - Rru_A0802 0.54 -0.1 958,076 + +0.5 958,076 + -0.5 958,076 + -0.5 958,076 + -1.2 958,076 + -0.1 958,077 - -0.2 958,077 - -1.8 958,173 - -0.2 958,173 - -0.2 958,173 - +0.2 958,173 - -0.9
Or see this region's nucleotide sequence