Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0758 and Rru_A0759 are separated by 331 nucleotides Rru_A0759 and Rru_A0760 are separated by 45 nucleotides
Rru_A0758: Rru_A0758 - Transcriptional Regulator, AraC family (NCBI), at 890,318 to 891,334
_A0758
Rru_A0759: Rru_A0759 - Aldo/keto reductase (NCBI), at 891,666 to 892,574
_A0759
Rru_A0760: Rru_A0760 - hypothetical protein (NCBI), at 892,620 to 893,921
_A0760
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1 at 890.683 kb on - strand, within Rru_A0758 at 890.816 kb on + strand, within Rru_A0758 at 890.817 kb on - strand, within Rru_A0758 at 890.817 kb on - strand, within Rru_A0758 at 890.817 kb on - strand, within Rru_A0758 at 890.817 kb on - strand, within Rru_A0758 at 890.817 kb on - strand, within Rru_A0758 at 890.930 kb on + strand, within Rru_A0758 at 890.942 kb on + strand, within Rru_A0758 at 890.942 kb on + strand, within Rru_A0758 at 890.942 kb on + strand, within Rru_A0758 at 890.942 kb on + strand, within Rru_A0758 at 890.943 kb on - strand, within Rru_A0758 at 890.943 kb on - strand, within Rru_A0758 at 891.152 kb on + strand, within Rru_A0758 at 891.152 kb on + strand, within Rru_A0758 at 891.153 kb on - strand, within Rru_A0758 at 891.211 kb on + strand, within Rru_A0758 at 891.316 kb on + strand at 891.316 kb on + strand at 891.317 kb on - strand at 891.413 kb on + strand at 891.413 kb on + strand at 891.413 kb on + strand at 891.434 kb on - strand at 891.434 kb on - strand at 891.495 kb on - strand at 891.508 kb on - strand at 891.541 kb on - strand at 891.607 kb on + strand at 891.607 kb on + strand at 891.607 kb on + strand at 891.608 kb on - strand at 891.608 kb on - strand at 891.608 kb on - strand at 891.833 kb on + strand, within Rru_A0759 at 891.834 kb on - strand, within Rru_A0759 at 891.846 kb on + strand, within Rru_A0759 at 891.846 kb on + strand, within Rru_A0759 at 891.847 kb on - strand, within Rru_A0759 at 892.029 kb on + strand, within Rru_A0759 at 892.029 kb on + strand, within Rru_A0759 at 892.029 kb on + strand, within Rru_A0759 at 892.029 kb on + strand, within Rru_A0759 at 892.029 kb on + strand, within Rru_A0759 at 892.029 kb on + strand, within Rru_A0759 at 892.030 kb on - strand, within Rru_A0759 at 892.030 kb on - strand, within Rru_A0759 at 892.030 kb on - strand, within Rru_A0759 at 892.030 kb on - strand, within Rru_A0759 at 892.196 kb on - strand, within Rru_A0759 at 892.212 kb on - strand, within Rru_A0759 at 892.214 kb on + strand, within Rru_A0759 at 892.237 kb on + strand, within Rru_A0759 at 892.311 kb on + strand, within Rru_A0759 at 892.312 kb on - strand, within Rru_A0759
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 890,683 - Rru_A0758 0.36 -0.3 890,816 + Rru_A0758 0.49 +0.3 890,817 - Rru_A0758 0.49 +0.5 890,817 - Rru_A0758 0.49 -0.2 890,817 - Rru_A0758 0.49 -0.3 890,817 - Rru_A0758 0.49 +0.1 890,817 - Rru_A0758 0.49 -0.3 890,930 + Rru_A0758 0.60 -0.5 890,942 + Rru_A0758 0.61 -0.7 890,942 + Rru_A0758 0.61 -0.3 890,942 + Rru_A0758 0.61 -0.0 890,942 + Rru_A0758 0.61 +0.0 890,943 - Rru_A0758 0.61 -0.4 890,943 - Rru_A0758 0.61 -0.2 891,152 + Rru_A0758 0.82 -0.6 891,152 + Rru_A0758 0.82 -0.3 891,153 - Rru_A0758 0.82 +0.2 891,211 + Rru_A0758 0.88 -0.1 891,316 + +1.3 891,316 + +0.7 891,317 - -0.5 891,413 + -0.0 891,413 + -0.6 891,413 + +0.6 891,434 - +0.6 891,434 - +0.8 891,495 - -0.2 891,508 - +0.1 891,541 - +0.2 891,607 + -0.1 891,607 + -0.3 891,607 + -0.1 891,608 - -1.0 891,608 - -0.2 891,608 - -1.6 891,833 + Rru_A0759 0.18 -0.0 891,834 - Rru_A0759 0.18 +0.2 891,846 + Rru_A0759 0.20 -0.7 891,846 + Rru_A0759 0.20 +0.3 891,847 - Rru_A0759 0.20 -0.1 892,029 + Rru_A0759 0.40 -0.7 892,029 + Rru_A0759 0.40 +0.6 892,029 + Rru_A0759 0.40 -0.1 892,029 + Rru_A0759 0.40 +0.4 892,029 + Rru_A0759 0.40 -0.7 892,029 + Rru_A0759 0.40 +0.9 892,030 - Rru_A0759 0.40 +0.1 892,030 - Rru_A0759 0.40 -0.2 892,030 - Rru_A0759 0.40 +0.4 892,030 - Rru_A0759 0.40 +0.1 892,196 - Rru_A0759 0.58 -0.2 892,212 - Rru_A0759 0.60 +1.1 892,214 + Rru_A0759 0.60 +1.0 892,237 + Rru_A0759 0.63 +0.2 892,311 + Rru_A0759 0.71 -0.1 892,312 - Rru_A0759 0.71 -0.3
Or see this region's nucleotide sequence