Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0727

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0726 and Rru_A0727 overlap by 4 nucleotidesRru_A0727 and Rru_A0728 overlap by 29 nucleotidesRru_A0728 and Rru_A0729 overlap by 4 nucleotides Rru_A0726: Rru_A0726 - Major facilitator superfamily MFS_1 (NCBI), at 854,393 to 855,799 _A0726 Rru_A0727: Rru_A0727 - hypothetical protein (NCBI), at 855,796 to 856,410 _A0727 Rru_A0728: Rru_A0728 - hypothetical protein (NCBI), at 856,382 to 856,843 _A0728 Rru_A0729: Rru_A0729 - Short-chain dehydrogenase/reductase SDR (NCBI), at 856,840 to 857,619 _A0729 Position (kb) 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.805 kb on - strand, within Rru_A0726at 854.805 kb on - strand, within Rru_A0726at 854.807 kb on - strand, within Rru_A0726at 854.807 kb on - strand, within Rru_A0726at 854.837 kb on + strand, within Rru_A0726at 854.838 kb on - strand, within Rru_A0726at 855.230 kb on + strand, within Rru_A0726at 855.230 kb on + strand, within Rru_A0726at 855.231 kb on - strand, within Rru_A0726at 855.641 kb on + strand, within Rru_A0726at 855.641 kb on + strand, within Rru_A0726at 855.642 kb on - strand, within Rru_A0726at 855.642 kb on - strand, within Rru_A0726at 855.916 kb on + strand, within Rru_A0727at 855.916 kb on + strand, within Rru_A0727at 855.993 kb on + strand, within Rru_A0727at 856.217 kb on + strand, within Rru_A0727at 856.217 kb on + strand, within Rru_A0727at 856.218 kb on - strand, within Rru_A0727at 856.383 kb on + strandat 856.383 kb on + strandat 856.383 kb on + strandat 856.384 kb on - strandat 856.446 kb on + strand, within Rru_A0728at 856.446 kb on + strand, within Rru_A0728at 856.447 kb on - strand, within Rru_A0728at 856.447 kb on - strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.785 kb on + strand, within Rru_A0728at 856.786 kb on - strand, within Rru_A0728at 856.786 kb on - strand, within Rru_A0728at 856.862 kb on - strandat 856.862 kb on - strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.884 kb on - strandat 856.892 kb on + strandat 856.893 kb on - strandat 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.923 kb on - strand, within Rru_A0729at 856.923 kb on - strand, within Rru_A0729at 857.124 kb on + strand, within Rru_A0729at 857.124 kb on + strand, within Rru_A0729at 857.124 kb on + strand, within Rru_A0729at 857.125 kb on - strand, within Rru_A0729at 857.153 kb on + strand, within Rru_A0729

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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854,804 + Rru_A0726 0.29 +0.9
854,804 + Rru_A0726 0.29 +1.0
854,804 + Rru_A0726 0.29 -0.1
854,804 + Rru_A0726 0.29 +0.1
854,804 + Rru_A0726 0.29 -1.0
854,805 - Rru_A0726 0.29 +0.6
854,805 - Rru_A0726 0.29 +0.1
854,807 - Rru_A0726 0.29 -0.3
854,807 - Rru_A0726 0.29 +0.1
854,837 + Rru_A0726 0.32 +0.1
854,838 - Rru_A0726 0.32 -0.2
855,230 + Rru_A0726 0.59 -0.5
855,230 + Rru_A0726 0.59 -0.0
855,231 - Rru_A0726 0.60 -0.3
855,641 + Rru_A0726 0.89 -0.0
855,641 + Rru_A0726 0.89 -0.0
855,642 - Rru_A0726 0.89 +0.8
855,642 - Rru_A0726 0.89 +0.2
855,916 + Rru_A0727 0.20 -0.2
855,916 + Rru_A0727 0.20 -0.8
855,993 + Rru_A0727 0.32 +1.1
856,217 + Rru_A0727 0.68 +1.8
856,217 + Rru_A0727 0.68 +0.6
856,218 - Rru_A0727 0.69 -0.0
856,383 + +0.3
856,383 + -0.5
856,383 + +0.1
856,384 - +0.4
856,446 + Rru_A0728 0.14 +0.2
856,446 + Rru_A0728 0.14 +0.4
856,447 - Rru_A0728 0.14 +0.2
856,447 - Rru_A0728 0.14 -0.1
856,651 + Rru_A0728 0.58 +0.6
856,651 + Rru_A0728 0.58 +0.0
856,651 + Rru_A0728 0.58 -0.7
856,651 + Rru_A0728 0.58 +0.0
856,651 + Rru_A0728 0.58 -0.2
856,652 - Rru_A0728 0.58 -0.2
856,652 - Rru_A0728 0.58 -0.2
856,652 - Rru_A0728 0.58 -0.3
856,652 - Rru_A0728 0.58 -1.2
856,658 + Rru_A0728 0.60 +0.8
856,658 + Rru_A0728 0.60 +0.3
856,658 + Rru_A0728 0.60 +0.3
856,658 + Rru_A0728 0.60 -0.4
856,773 + Rru_A0728 0.85 -0.2
856,773 + Rru_A0728 0.85 -2.6
856,773 + Rru_A0728 0.85 +0.1
856,773 + Rru_A0728 0.85 +0.2
856,774 - Rru_A0728 0.85 +0.2
856,774 - Rru_A0728 0.85 +0.7
856,774 - Rru_A0728 0.85 +0.2
856,774 - Rru_A0728 0.85 -1.0
856,785 + Rru_A0728 0.87 -0.1
856,786 - Rru_A0728 0.87 +0.3
856,786 - Rru_A0728 0.87 -1.1
856,862 - -0.1
856,862 - -0.0
856,883 + +0.5
856,883 + -0.0
856,883 + -0.7
856,883 + +0.2
856,883 + +0.4
856,884 - -0.2
856,892 + -0.2
856,893 - -0.7
856,922 + Rru_A0729 0.11 -0.7
856,922 + Rru_A0729 0.11 +0.2
856,922 + Rru_A0729 0.11 -0.3
856,922 + Rru_A0729 0.11 +0.5
856,922 + Rru_A0729 0.11 +0.3
856,923 - Rru_A0729 0.11 -1.8
856,923 - Rru_A0729 0.11 -0.2
857,124 + Rru_A0729 0.36 -0.8
857,124 + Rru_A0729 0.36 -1.2
857,124 + Rru_A0729 0.36 -0.3
857,125 - Rru_A0729 0.37 -0.4
857,153 + Rru_A0729 0.40 -1.3

Or see this region's nucleotide sequence