Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0697 and Rru_A0698 are separated by 118 nucleotides Rru_A0698 and Rru_A0699 are separated by 398 nucleotides Rru_A0699 and Rru_A0700 are separated by 8 nucleotides
Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652
_A0697
Rru_A0698: Rru_A0698 - Lipolytic enzyme (NCBI), at 827,771 to 828,802
_A0698
Rru_A0699: Rru_A0699 - Plasmid stabilization system (NCBI), at 829,201 to 829,515
_A0699
Rru_A0700: Rru_A0700 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 829,524 to 829,766
_A0700
Position (kb) 827
828
829 Strain fitness (log2 ratio) -1
0
1 at 826.945 kb on + strand, within Rru_A0697 at 827.483 kb on - strand, within Rru_A0697 at 827.721 kb on - strand at 827.721 kb on - strand at 827.725 kb on - strand at 828.103 kb on - strand, within Rru_A0698 at 828.460 kb on - strand, within Rru_A0698 at 828.478 kb on - strand, within Rru_A0698 at 828.606 kb on + strand, within Rru_A0698 at 828.606 kb on + strand, within Rru_A0698 at 828.606 kb on + strand, within Rru_A0698 at 828.974 kb on - strand at 829.041 kb on + strand at 829.042 kb on - strand at 829.042 kb on - strand at 829.042 kb on - strand at 829.217 kb on + strand at 829.217 kb on + strand at 829.218 kb on - strand at 829.220 kb on + strand at 829.220 kb on + strand at 829.221 kb on - strand at 829.221 kb on - strand at 829.221 kb on - strand at 829.261 kb on + strand, within Rru_A0699 at 829.262 kb on - strand, within Rru_A0699 at 829.262 kb on - strand, within Rru_A0699 at 829.272 kb on + strand, within Rru_A0699 at 829.273 kb on - strand, within Rru_A0699 at 829.302 kb on - strand, within Rru_A0699 at 829.419 kb on - strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.729 kb on + strand, within Rru_A0700 at 829.783 kb on + strand at 829.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 826,945 + Rru_A0697 0.50 +0.1 827,483 - Rru_A0697 0.88 +0.2 827,721 - +0.1 827,721 - -0.1 827,725 - +1.3 828,103 - Rru_A0698 0.32 -0.4 828,460 - Rru_A0698 0.67 +0.3 828,478 - Rru_A0698 0.69 +1.6 828,606 + Rru_A0698 0.81 -0.3 828,606 + Rru_A0698 0.81 +0.2 828,606 + Rru_A0698 0.81 +0.6 828,974 - -1.3 829,041 + -0.2 829,042 - -0.3 829,042 - -0.0 829,042 - -0.2 829,217 + +0.1 829,217 + -0.0 829,218 - -0.6 829,220 + -0.3 829,220 + +0.2 829,221 - +0.0 829,221 - +0.9 829,221 - -1.5 829,261 + Rru_A0699 0.19 +0.0 829,262 - Rru_A0699 0.19 -0.3 829,262 - Rru_A0699 0.19 +0.1 829,272 + Rru_A0699 0.23 -0.2 829,273 - Rru_A0699 0.23 +0.1 829,302 - Rru_A0699 0.32 +0.5 829,419 - Rru_A0699 0.69 -1.6 829,421 + Rru_A0699 0.70 -0.4 829,421 + Rru_A0699 0.70 -1.2 829,421 + Rru_A0699 0.70 +0.5 829,421 + Rru_A0699 0.70 +0.0 829,421 + Rru_A0699 0.70 -1.6 829,421 + Rru_A0699 0.70 +0.1 829,421 + Rru_A0699 0.70 +0.1 829,460 + Rru_A0699 0.82 +0.2 829,460 + Rru_A0699 0.82 +0.9 829,460 + Rru_A0699 0.82 -0.4 829,461 - Rru_A0699 0.83 +0.7 829,461 - Rru_A0699 0.83 +0.7 829,461 - Rru_A0699 0.83 -0.2 829,729 + Rru_A0700 0.84 -0.4 829,783 + +0.1 829,784 - +0.4
Or see this region's nucleotide sequence