Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0679 and Rru_A0680 are separated by 95 nucleotides Rru_A0680 and Rru_A0681 are separated by 201 nucleotides Rru_A0681 and Rru_A0682 are separated by 141 nucleotides
Rru_A0679: Rru_A0679 - Transcriptional Regulator, TetR family (NCBI), at 802,420 to 803,043
_A0679
Rru_A0680: Rru_A0680 - hypothetical protein (NCBI), at 803,139 to 803,831
_A0680
Rru_A0681: Rru_A0681 - hypothetical protein (NCBI), at 804,033 to 804,701
_A0681
Rru_A0682: Rru_A0682 - Glutathione reductase (NCBI), at 804,843 to 806,222
_A0682
Position (kb) 804
805 Strain fitness (log2 ratio) -1
0
1
2 at 803.153 kb on - strand at 803.409 kb on + strand, within Rru_A0680 at 803.410 kb on - strand, within Rru_A0680 at 803.514 kb on + strand, within Rru_A0680 at 803.515 kb on - strand, within Rru_A0680 at 803.515 kb on - strand, within Rru_A0680 at 803.773 kb on + strand at 803.784 kb on + strand at 803.784 kb on + strand at 803.785 kb on - strand at 803.785 kb on - strand at 803.879 kb on - strand at 803.898 kb on + strand at 803.898 kb on + strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.904 kb on + strand at 803.904 kb on + strand at 803.919 kb on + strand at 803.920 kb on - strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.693 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.696 kb on - strand at 804.758 kb on + strand at 804.799 kb on + strand at 804.799 kb on + strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.818 kb on + strand at 804.818 kb on + strand at 804.819 kb on - strand at 804.869 kb on + strand at 805.618 kb on - strand, within Rru_A0682
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 803,153 - -0.1 803,409 + Rru_A0680 0.39 -0.4 803,410 - Rru_A0680 0.39 +0.1 803,514 + Rru_A0680 0.54 +0.6 803,515 - Rru_A0680 0.54 -0.1 803,515 - Rru_A0680 0.54 -1.0 803,773 + -0.2 803,784 + +0.2 803,784 + -0.2 803,785 - -0.2 803,785 - +0.2 803,879 - -0.2 803,898 + +0.3 803,898 + +0.4 803,899 - -0.2 803,899 - -0.9 803,899 - +1.3 803,899 - -0.2 803,899 - -0.5 803,904 + -0.0 803,904 + +0.0 803,919 + -0.3 803,920 - +0.4 804,010 + -0.3 804,010 + -0.4 804,311 + Rru_A0681 0.42 +0.4 804,311 + Rru_A0681 0.42 -0.0 804,311 + Rru_A0681 0.42 +0.3 804,311 + Rru_A0681 0.42 +2.1 804,312 - Rru_A0681 0.42 +0.3 804,312 - Rru_A0681 0.42 -0.1 804,312 - Rru_A0681 0.42 +0.7 804,693 + -0.1 804,695 + -0.0 804,695 + +0.3 804,695 + -0.5 804,695 + -0.0 804,696 - -0.7 804,758 + -0.4 804,799 + +0.4 804,799 + -0.1 804,800 - +0.2 804,800 - -1.3 804,800 - -0.2 804,818 + -0.2 804,818 + -0.2 804,819 - +0.5 804,869 + -0.4 805,618 - Rru_A0682 0.56 -0.1
Or see this region's nucleotide sequence