Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0642 and Rru_A0643 are separated by 27 nucleotides Rru_A0643 and Rru_A0644 are separated by 83 nucleotides Rru_A0644 and Rru_A0645 are separated by 166 nucleotides
Rru_A0642: Rru_A0642 - Protein of unknown function DUF185 (NCBI), at 763,615 to 764,709
_A0642
Rru_A0643: Rru_A0643 - Protein of unknown function DUF152 (NCBI), at 764,737 to 765,504
_A0643
Rru_A0644: Rru_A0644 - hypothetical protein (NCBI), at 765,588 to 766,616
_A0644
Rru_A0645: Rru_A0645 - Ribose-phosphate pyrophosphokinase (NCBI), at 766,783 to 767,715
_A0645
Position (kb) 765
766
767 Strain fitness (log2 ratio) -1
0
1 at 764.727 kb on - strand at 764.790 kb on + strand at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 765.148 kb on - strand, within Rru_A0643 at 765.192 kb on + strand, within Rru_A0643 at 765.232 kb on + strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.433 kb on + strand at 765.902 kb on - strand, within Rru_A0644 at 765.902 kb on - strand, within Rru_A0644 at 766.535 kb on - strand at 766.614 kb on + strand at 766.649 kb on + strand at 766.764 kb on + strand at 767.509 kb on + strand, within Rru_A0645
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 764,727 - +0.3 764,790 + -1.0 764,821 + Rru_A0643 0.11 -0.6 764,821 + Rru_A0643 0.11 -0.2 764,821 + Rru_A0643 0.11 +0.6 764,821 + Rru_A0643 0.11 -0.2 764,821 + Rru_A0643 0.11 -0.8 764,822 - Rru_A0643 0.11 -0.4 764,822 - Rru_A0643 0.11 -1.1 764,822 - Rru_A0643 0.11 -0.4 764,822 - Rru_A0643 0.11 -1.3 764,822 - Rru_A0643 0.11 -0.1 765,148 - Rru_A0643 0.54 -0.0 765,192 + Rru_A0643 0.59 -0.5 765,232 + Rru_A0643 0.64 -0.2 765,233 - Rru_A0643 0.65 -0.2 765,233 - Rru_A0643 0.65 -0.1 765,233 - Rru_A0643 0.65 +0.4 765,233 - Rru_A0643 0.65 +1.3 765,233 - Rru_A0643 0.65 -0.3 765,344 - Rru_A0643 0.79 +0.0 765,344 - Rru_A0643 0.79 -0.9 765,433 + +0.1 765,902 - Rru_A0644 0.31 +0.1 765,902 - Rru_A0644 0.31 +1.3 766,535 - -0.1 766,614 + -0.1 766,649 + -1.1 766,764 + +0.2 767,509 + Rru_A0645 0.78 -0.0
Or see this region's nucleotide sequence