Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0593

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0592 and Rru_A0593 are separated by 245 nucleotidesRru_A0593 and Rru_A0594 overlap by 1 nucleotidesRru_A0594 and Rru_A0595 are separated by 160 nucleotides Rru_A0592: Rru_A0592 - extracellular solute-binding protein, family 5 (NCBI), at 702,661 to 704,298 _A0592 Rru_A0593: Rru_A0593 - Twin-arginine translocation pathway signal (NCBI), at 704,544 to 705,452 _A0593 Rru_A0594: Rru_A0594 - Protein of unknown function UPF0191 (NCBI), at 705,452 to 706,078 _A0594 Rru_A0595: Rru_A0595 - transketolase (NCBI), at 706,239 to 708,221 _A0595 Position (kb) 704 705 706Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 703.574 kb on + strand, within Rru_A0592at 703.575 kb on - strand, within Rru_A0592at 703.575 kb on - strand, within Rru_A0592at 703.632 kb on + strand, within Rru_A0592at 703.633 kb on - strand, within Rru_A0592at 703.634 kb on + strand, within Rru_A0592at 703.745 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.835 kb on + strand, within Rru_A0592at 703.836 kb on - strand, within Rru_A0592at 703.836 kb on - strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.858 kb on - strand, within Rru_A0592at 703.858 kb on - strand, within Rru_A0592at 703.858 kb on - strand, within Rru_A0592at 703.859 kb on + strand, within Rru_A0592at 703.859 kb on + strand, within Rru_A0592at 703.860 kb on - strand, within Rru_A0592at 703.860 kb on - strand, within Rru_A0592at 703.916 kb on + strand, within Rru_A0592at 703.980 kb on + strand, within Rru_A0592at 703.980 kb on + strand, within Rru_A0592at 703.981 kb on - strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.983 kb on - strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.073 kb on + strand, within Rru_A0592at 704.073 kb on + strand, within Rru_A0592at 704.073 kb on + strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.156 kb on - strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.468 kb on + strandat 704.468 kb on + strandat 704.469 kb on - strandat 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.734 kb on - strand, within Rru_A0593at 704.734 kb on - strand, within Rru_A0593at 704.783 kb on + strand, within Rru_A0593at 704.784 kb on - strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 705.001 kb on - strand, within Rru_A0593at 705.001 kb on - strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.285 kb on + strand, within Rru_A0593at 705.294 kb on + strand, within Rru_A0593at 705.295 kb on - strand, within Rru_A0593at 705.421 kb on - strandat 705.447 kb on + strandat 705.447 kb on + strandat 705.447 kb on + strandat 705.447 kb on + strandat 705.448 kb on - strandat 705.448 kb on - strandat 705.448 kb on - strandat 705.719 kb on + strand, within Rru_A0594at 705.719 kb on + strand, within Rru_A0594at 705.743 kb on + strand, within Rru_A0594at 705.743 kb on + strand, within Rru_A0594at 705.744 kb on - strand, within Rru_A0594at 705.744 kb on - strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.808 kb on + strand, within Rru_A0594at 705.809 kb on - strand, within Rru_A0594at 705.809 kb on - strand, within Rru_A0594at 705.924 kb on - strand, within Rru_A0594at 705.953 kb on + strand, within Rru_A0594at 705.953 kb on + strand, within Rru_A0594at 705.953 kb on + strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 706.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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703,574 + Rru_A0592 0.56 +0.1
703,575 - Rru_A0592 0.56 -0.0
703,575 - Rru_A0592 0.56 -1.1
703,632 + Rru_A0592 0.59 -0.5
703,633 - Rru_A0592 0.59 -0.5
703,634 + Rru_A0592 0.59 -0.1
703,745 + Rru_A0592 0.66 +0.3
703,833 + Rru_A0592 0.72 +0.8
703,833 + Rru_A0592 0.72 -0.5
703,833 + Rru_A0592 0.72 +1.2
703,833 + Rru_A0592 0.72 -0.2
703,835 + Rru_A0592 0.72 -0.2
703,836 - Rru_A0592 0.72 +0.3
703,836 - Rru_A0592 0.72 -0.5
703,857 + Rru_A0592 0.73 -0.3
703,857 + Rru_A0592 0.73 -0.8
703,857 + Rru_A0592 0.73 +0.6
703,857 + Rru_A0592 0.73 -0.3
703,857 + Rru_A0592 0.73 +0.6
703,857 + Rru_A0592 0.73 -0.3
703,858 - Rru_A0592 0.73 -1.1
703,858 - Rru_A0592 0.73 +0.1
703,858 - Rru_A0592 0.73 -0.1
703,859 + Rru_A0592 0.73 +0.8
703,859 + Rru_A0592 0.73 -1.6
703,860 - Rru_A0592 0.73 -1.4
703,860 - Rru_A0592 0.73 -3.0
703,916 + Rru_A0592 0.77 -0.5
703,980 + Rru_A0592 0.81 -0.2
703,980 + Rru_A0592 0.81 -0.4
703,981 - Rru_A0592 0.81 +0.6
703,982 + Rru_A0592 0.81 -0.3
703,982 + Rru_A0592 0.81 -0.2
703,982 + Rru_A0592 0.81 +0.1
703,982 + Rru_A0592 0.81 -0.0
703,982 + Rru_A0592 0.81 -0.6
703,983 - Rru_A0592 0.81 -1.1
704,069 + Rru_A0592 0.86 -0.3
704,069 + Rru_A0592 0.86 +0.1
704,069 + Rru_A0592 0.86 -0.1
704,069 + Rru_A0592 0.86 +0.0
704,069 + Rru_A0592 0.86 -0.3
704,069 + Rru_A0592 0.86 -0.2
704,069 + Rru_A0592 0.86 -0.2
704,070 - Rru_A0592 0.86 -0.3
704,070 - Rru_A0592 0.86 -0.3
704,070 - Rru_A0592 0.86 -0.6
704,070 - Rru_A0592 0.86 -0.6
704,070 - Rru_A0592 0.86 -0.8
704,073 + Rru_A0592 0.86 +0.4
704,073 + Rru_A0592 0.86 -0.7
704,073 + Rru_A0592 0.86 +1.3
704,074 - Rru_A0592 0.86 +0.1
704,074 - Rru_A0592 0.86 -0.1
704,074 - Rru_A0592 0.86 -0.2
704,074 - Rru_A0592 0.86 -0.1
704,074 - Rru_A0592 0.86 +0.2
704,074 - Rru_A0592 0.86 -0.5
704,074 - Rru_A0592 0.86 +0.9
704,156 - +0.6
704,466 + +0.4
704,466 + +1.7
704,466 + +1.9
704,466 + -0.2
704,466 + +1.0
704,466 + -0.6
704,466 + +0.4
704,466 + +0.1
704,466 + +0.7
704,466 + -1.0
704,466 + -0.2
704,467 - +0.5
704,467 - +0.2
704,467 - -0.3
704,467 - +0.5
704,467 - +0.5
704,467 - -0.7
704,467 - +0.4
704,467 - +0.2
704,468 + +0.1
704,468 + -0.1
704,469 - +0.3
704,733 + Rru_A0593 0.21 +0.4
704,733 + Rru_A0593 0.21 +0.2
704,733 + Rru_A0593 0.21 +0.1
704,733 + Rru_A0593 0.21 +1.0
704,733 + Rru_A0593 0.21 +0.2
704,734 - Rru_A0593 0.21 +0.1
704,734 - Rru_A0593 0.21 +0.5
704,783 + Rru_A0593 0.26 -0.4
704,784 - Rru_A0593 0.26 -0.7
704,898 + Rru_A0593 0.39 -0.4
704,898 + Rru_A0593 0.39 +0.2
704,898 + Rru_A0593 0.39 +0.0
705,001 - Rru_A0593 0.50 +0.5
705,001 - Rru_A0593 0.50 +0.0
705,135 + Rru_A0593 0.65 -0.0
705,135 + Rru_A0593 0.65 +0.1
705,135 + Rru_A0593 0.65 +0.4
705,136 - Rru_A0593 0.65 +0.4
705,136 - Rru_A0593 0.65 +0.3
705,136 - Rru_A0593 0.65 -0.1
705,136 - Rru_A0593 0.65 -1.3
705,136 - Rru_A0593 0.65 +0.7
705,136 - Rru_A0593 0.65 +0.6
705,136 - Rru_A0593 0.65 -0.1
705,136 - Rru_A0593 0.65 +0.6
705,136 - Rru_A0593 0.65 +0.9
705,285 + Rru_A0593 0.82 +0.4
705,294 + Rru_A0593 0.83 -0.0
705,295 - Rru_A0593 0.83 +0.5
705,421 - +1.3
705,447 + -0.1
705,447 + -0.1
705,447 + +0.8
705,447 + -0.1
705,448 - +0.2
705,448 - +0.2
705,448 - +0.0
705,719 + Rru_A0594 0.43 -0.2
705,719 + Rru_A0594 0.43 -0.2
705,743 + Rru_A0594 0.46 +0.7
705,743 + Rru_A0594 0.46 +1.3
705,744 - Rru_A0594 0.47 +0.3
705,744 - Rru_A0594 0.47 -0.6
705,806 + Rru_A0594 0.56 +0.3
705,806 + Rru_A0594 0.56 +0.1
705,806 + Rru_A0594 0.56 +0.7
705,806 + Rru_A0594 0.56 -0.5
705,806 + Rru_A0594 0.56 +0.1
705,807 - Rru_A0594 0.57 +0.2
705,807 - Rru_A0594 0.57 -0.1
705,807 - Rru_A0594 0.57 -0.0
705,807 - Rru_A0594 0.57 -0.3
705,808 + Rru_A0594 0.57 -0.1
705,809 - Rru_A0594 0.57 -0.0
705,809 - Rru_A0594 0.57 +0.9
705,924 - Rru_A0594 0.75 +1.3
705,953 + Rru_A0594 0.80 -0.0
705,953 + Rru_A0594 0.80 +0.2
705,953 + Rru_A0594 0.80 +0.1
705,954 - Rru_A0594 0.80 -0.1
705,954 - Rru_A0594 0.80 +0.3
705,954 - Rru_A0594 0.80 +1.6
705,954 - Rru_A0594 0.80 -0.1
706,223 + -0.5

Or see this region's nucleotide sequence