Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0579

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0578 and Rru_A0579 are separated by 46 nucleotidesRru_A0579 and Rru_A0580 are separated by 91 nucleotidesRru_A0580 and Rru_A0581 are separated by 173 nucleotides Rru_A0578: Rru_A0578 - Metallophosphoesterase (NCBI), at 687,205 to 688,182 _A0578 Rru_A0579: Rru_A0579 - Glycosyl transferase, group 1 (NCBI), at 688,229 to 689,302 _A0579 Rru_A0580: Rru_A0580 - OsmC-like protein (NCBI), at 689,394 to 689,828 _A0580 Rru_A0581: Rru_A0581 - Three-deoxy-D-manno-octulosonic-acidtransferase-like (NCBI), at 690,002 to 691,318 _A0581 Position (kb) 688 689 690Strain fitness (log2 ratio) -1 0 1 2 3at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.592 kb on + strand, within Rru_A0578at 687.706 kb on + strand, within Rru_A0578at 687.706 kb on + strand, within Rru_A0578at 687.742 kb on + strand, within Rru_A0578at 687.742 kb on + strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.762 kb on + strand, within Rru_A0578at 687.806 kb on - strand, within Rru_A0578at 687.824 kb on - strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 688.235 kb on - strandat 688.235 kb on - strandat 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.337 kb on + strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.338 kb on - strand, within Rru_A0579at 688.379 kb on + strand, within Rru_A0579at 688.379 kb on + strand, within Rru_A0579at 688.381 kb on + strand, within Rru_A0579at 688.382 kb on - strand, within Rru_A0579at 688.382 kb on - strand, within Rru_A0579at 688.485 kb on + strand, within Rru_A0579at 688.485 kb on + strand, within Rru_A0579at 688.486 kb on - strand, within Rru_A0579at 688.500 kb on - strand, within Rru_A0579at 688.556 kb on + strand, within Rru_A0579at 688.595 kb on + strand, within Rru_A0579at 688.596 kb on - strand, within Rru_A0579at 688.596 kb on - strand, within Rru_A0579at 688.596 kb on - strand, within Rru_A0579at 688.790 kb on + strand, within Rru_A0579at 688.790 kb on + strand, within Rru_A0579at 688.790 kb on + strand, within Rru_A0579at 688.791 kb on - strand, within Rru_A0579at 688.791 kb on - strand, within Rru_A0579at 688.955 kb on + strand, within Rru_A0579at 688.956 kb on - strand, within Rru_A0579at 688.956 kb on - strand, within Rru_A0579at 689.054 kb on + strand, within Rru_A0579at 689.301 kb on - strandat 689.311 kb on + strandat 689.311 kb on + strandat 689.311 kb on + strandat 689.311 kb on + strandat 689.311 kb on + strandat 689.312 kb on - strandat 689.312 kb on - strandat 689.312 kb on - strandat 689.312 kb on - strandat 689.313 kb on + strandat 689.313 kb on + strandat 689.313 kb on + strandat 689.313 kb on + strandat 689.314 kb on - strandat 689.314 kb on - strandat 689.484 kb on + strand, within Rru_A0580at 689.484 kb on + strand, within Rru_A0580at 689.484 kb on + strand, within Rru_A0580at 689.484 kb on + strand, within Rru_A0580at 689.601 kb on - strand, within Rru_A0580at 689.826 kb on + strandat 689.826 kb on + strandat 689.826 kb on + strandat 689.826 kb on + strandat 689.826 kb on + strandat 689.826 kb on + strandat 689.827 kb on - strandat 689.827 kb on - strandat 689.966 kb on + strandat 689.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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687,436 + Rru_A0578 0.24 -0.1
687,436 + Rru_A0578 0.24 -0.1
687,436 + Rru_A0578 0.24 +0.2
687,436 + Rru_A0578 0.24 -0.8
687,437 - Rru_A0578 0.24 -0.1
687,437 - Rru_A0578 0.24 -0.5
687,437 - Rru_A0578 0.24 -0.2
687,437 - Rru_A0578 0.24 +0.1
687,592 + Rru_A0578 0.40 +0.2
687,706 + Rru_A0578 0.51 +1.1
687,706 + Rru_A0578 0.51 -0.0
687,742 + Rru_A0578 0.55 -1.5
687,742 + Rru_A0578 0.55 -0.3
687,743 - Rru_A0578 0.55 +0.1
687,743 - Rru_A0578 0.55 +0.2
687,743 - Rru_A0578 0.55 -0.3
687,762 + Rru_A0578 0.57 -0.8
687,806 - Rru_A0578 0.61 -0.6
687,824 - Rru_A0578 0.63 -0.5
687,856 + Rru_A0578 0.67 -0.3
687,856 + Rru_A0578 0.67 +0.1
687,856 + Rru_A0578 0.67 -0.2
687,856 + Rru_A0578 0.67 -0.2
688,235 - -0.1
688,235 - -0.3
688,337 + Rru_A0579 0.10 -0.1
688,337 + Rru_A0579 0.10 -0.1
688,337 + Rru_A0579 0.10 -0.6
688,337 + Rru_A0579 0.10 +1.6
688,337 + Rru_A0579 0.10 +0.2
688,337 + Rru_A0579 0.10 +1.3
688,337 + Rru_A0579 0.10 +0.5
688,337 + Rru_A0579 0.10 +0.2
688,337 + Rru_A0579 0.10 +0.3
688,337 + Rru_A0579 0.10 +0.0
688,337 + Rru_A0579 0.10 -0.3
688,338 - Rru_A0579 0.10 -0.0
688,338 - Rru_A0579 0.10 -1.3
688,338 - Rru_A0579 0.10 -0.2
688,338 - Rru_A0579 0.10 +1.1
688,338 - Rru_A0579 0.10 -0.1
688,379 + Rru_A0579 0.14 -0.1
688,379 + Rru_A0579 0.14 +0.1
688,381 + Rru_A0579 0.14 -0.2
688,382 - Rru_A0579 0.14 +0.2
688,382 - Rru_A0579 0.14 +0.1
688,485 + Rru_A0579 0.24 -0.3
688,485 + Rru_A0579 0.24 -0.1
688,486 - Rru_A0579 0.24 -0.7
688,500 - Rru_A0579 0.25 +2.1
688,556 + Rru_A0579 0.30 +0.4
688,595 + Rru_A0579 0.34 +2.9
688,596 - Rru_A0579 0.34 -0.0
688,596 - Rru_A0579 0.34 -0.3
688,596 - Rru_A0579 0.34 -0.1
688,790 + Rru_A0579 0.52 +0.2
688,790 + Rru_A0579 0.52 -0.5
688,790 + Rru_A0579 0.52 +0.2
688,791 - Rru_A0579 0.52 +0.1
688,791 - Rru_A0579 0.52 +0.7
688,955 + Rru_A0579 0.68 -0.2
688,956 - Rru_A0579 0.68 +0.8
688,956 - Rru_A0579 0.68 +0.1
689,054 + Rru_A0579 0.77 -0.4
689,301 - +0.1
689,311 + +0.6
689,311 + -0.1
689,311 + -0.1
689,311 + -0.5
689,311 + -0.3
689,312 - -0.5
689,312 - +0.3
689,312 - -0.0
689,312 - -0.0
689,313 + +0.2
689,313 + -0.1
689,313 + +0.5
689,313 + +0.1
689,314 - +0.0
689,314 - -0.9
689,484 + Rru_A0580 0.21 -0.3
689,484 + Rru_A0580 0.21 -1.0
689,484 + Rru_A0580 0.21 +0.3
689,484 + Rru_A0580 0.21 +0.1
689,601 - Rru_A0580 0.48 -0.1
689,826 + -0.3
689,826 + +0.6
689,826 + -0.2
689,826 + -0.2
689,826 + -0.7
689,826 + +0.6
689,827 - +0.3
689,827 - -0.1
689,966 + -0.1
689,966 + +0.7

Or see this region's nucleotide sequence