Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0548

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0546 and Rru_A0547 are separated by 195 nucleotidesRru_A0547 and Rru_A0548 are separated by 28 nucleotidesRru_A0548 and Rru_A0549 are separated by 256 nucleotides Rru_A0546: Rru_A0546 - hypothetical protein (NCBI), at 643,105 to 645,090 _A0546 Rru_A0547: Rru_A0547 - Flagellar hook capping protein (NCBI), at 645,286 to 646,023 _A0547 Rru_A0548: Rru_A0548 - Flagellar hook-length control protein (NCBI), at 646,052 to 647,875 _A0548 Rru_A0549: Rru_A0549 - hypothetical protein (NCBI), at 648,132 to 649,259 _A0549 Position (kb) 646 647 648Strain fitness (log2 ratio) -2 -1 0 1at 645.080 kb on + strandat 645.080 kb on + strandat 645.081 kb on - strandat 645.081 kb on - strandat 645.156 kb on + strandat 645.217 kb on - strandat 645.267 kb on - strandat 645.354 kb on + strandat 645.355 kb on - strandat 645.514 kb on - strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.519 kb on - strand, within Rru_A0547at 645.519 kb on - strand, within Rru_A0547at 645.546 kb on - strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.856 kb on - strand, within Rru_A0547at 645.856 kb on - strand, within Rru_A0547at 645.933 kb on + strand, within Rru_A0547at 645.934 kb on - strand, within Rru_A0547at 646.012 kb on + strandat 646.013 kb on - strandat 646.013 kb on - strandat 646.918 kb on + strand, within Rru_A0548at 646.918 kb on + strand, within Rru_A0548at 646.919 kb on - strand, within Rru_A0548at 646.919 kb on - strand, within Rru_A0548at 646.919 kb on - strand, within Rru_A0548at 646.921 kb on + strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 647.048 kb on - strand, within Rru_A0548at 647.763 kb on - strandat 648.203 kb on - strandat 648.203 kb on - strandat 648.203 kb on - strandat 648.686 kb on + strand, within Rru_A0549at 648.686 kb on + strand, within Rru_A0549at 648.686 kb on + strand, within Rru_A0549at 648.686 kb on + strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.688 kb on + strand, within Rru_A0549at 648.688 kb on + strand, within Rru_A0549at 648.688 kb on + strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.697 kb on + strand, within Rru_A0549at 648.698 kb on - strand, within Rru_A0549at 648.778 kb on + strand, within Rru_A0549at 648.778 kb on + strand, within Rru_A0549at 648.823 kb on + strand, within Rru_A0549at 648.824 kb on - strand, within Rru_A0549

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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645,080 + -1.0
645,080 + +0.2
645,081 - -0.0
645,081 - -0.6
645,156 + -0.5
645,217 - -0.1
645,267 - +0.1
645,354 + +0.0
645,355 - -0.6
645,514 - Rru_A0547 0.31 -0.3
645,518 + Rru_A0547 0.31 -0.1
645,518 + Rru_A0547 0.31 -0.6
645,518 + Rru_A0547 0.31 +0.3
645,518 + Rru_A0547 0.31 -0.8
645,519 - Rru_A0547 0.32 -0.4
645,519 - Rru_A0547 0.32 -0.0
645,546 - Rru_A0547 0.35 +0.1
645,674 + Rru_A0547 0.53 +0.2
645,674 + Rru_A0547 0.53 +1.1
645,674 + Rru_A0547 0.53 +0.1
645,674 + Rru_A0547 0.53 +0.3
645,674 + Rru_A0547 0.53 -0.0
645,674 + Rru_A0547 0.53 -0.2
645,675 - Rru_A0547 0.53 -0.3
645,675 - Rru_A0547 0.53 -0.7
645,675 - Rru_A0547 0.53 -0.1
645,731 + Rru_A0547 0.60 -0.2
645,731 + Rru_A0547 0.60 +0.4
645,731 + Rru_A0547 0.60 +1.0
645,732 - Rru_A0547 0.60 -0.3
645,732 - Rru_A0547 0.60 -0.2
645,732 - Rru_A0547 0.60 -0.3
645,732 - Rru_A0547 0.60 +0.0
645,732 - Rru_A0547 0.60 +0.1
645,732 - Rru_A0547 0.60 -0.2
645,856 - Rru_A0547 0.77 -0.8
645,856 - Rru_A0547 0.77 -1.5
645,933 + Rru_A0547 0.88 +1.0
645,934 - Rru_A0547 0.88 +0.1
646,012 + -0.1
646,013 - -1.0
646,013 - +0.3
646,918 + Rru_A0548 0.47 -1.1
646,918 + Rru_A0548 0.47 +0.3
646,919 - Rru_A0548 0.48 +0.1
646,919 - Rru_A0548 0.48 -0.6
646,919 - Rru_A0548 0.48 +0.1
646,921 + Rru_A0548 0.48 +0.7
646,922 - Rru_A0548 0.48 -0.0
646,922 - Rru_A0548 0.48 +0.5
646,922 - Rru_A0548 0.48 +1.0
646,922 - Rru_A0548 0.48 +0.3
647,048 - Rru_A0548 0.55 +0.4
647,763 - +0.1
648,203 - -0.2
648,203 - -0.1
648,203 - -0.5
648,686 + Rru_A0549 0.49 +0.8
648,686 + Rru_A0549 0.49 +0.1
648,686 + Rru_A0549 0.49 -0.3
648,686 + Rru_A0549 0.49 +0.5
648,687 - Rru_A0549 0.49 -0.1
648,687 - Rru_A0549 0.49 -0.3
648,687 - Rru_A0549 0.49 -0.3
648,687 - Rru_A0549 0.49 +0.5
648,688 + Rru_A0549 0.49 +0.1
648,688 + Rru_A0549 0.49 +0.1
648,688 + Rru_A0549 0.49 -1.0
648,689 - Rru_A0549 0.49 -0.1
648,689 - Rru_A0549 0.49 -0.5
648,689 - Rru_A0549 0.49 -0.8
648,689 - Rru_A0549 0.49 -0.1
648,697 + Rru_A0549 0.50 -2.4
648,698 - Rru_A0549 0.50 -1.2
648,778 + Rru_A0549 0.57 -0.6
648,778 + Rru_A0549 0.57 -0.2
648,823 + Rru_A0549 0.61 +0.2
648,824 - Rru_A0549 0.61 -0.2

Or see this region's nucleotide sequence