Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0494 and Rru_A0495 are separated by 6 nucleotides Rru_A0495 and Rru_A0496 are separated by 127 nucleotides Rru_A0496 and Rru_A0497 are separated by 45 nucleotides
Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364
_A0494
Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706
_A0495
Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223
_A0496
Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369
_A0497
Position (kb) 581
582 Strain fitness (log2 ratio) -1
0
1 at 580.459 kb on + strand, within Rru_A0494 at 580.553 kb on - strand, within Rru_A0494 at 580.599 kb on + strand, within Rru_A0494 at 580.599 kb on + strand, within Rru_A0494 at 580.867 kb on + strand, within Rru_A0494 at 580.867 kb on + strand, within Rru_A0494 at 580.868 kb on - strand, within Rru_A0494 at 580.868 kb on - strand, within Rru_A0494 at 580.868 kb on - strand, within Rru_A0494 at 580.990 kb on + strand, within Rru_A0494 at 580.990 kb on + strand, within Rru_A0494 at 580.990 kb on + strand, within Rru_A0494 at 580.991 kb on - strand, within Rru_A0494 at 580.991 kb on - strand, within Rru_A0494 at 581.065 kb on + strand, within Rru_A0494 at 581.200 kb on + strand, within Rru_A0494 at 581.200 kb on + strand, within Rru_A0494 at 581.201 kb on - strand, within Rru_A0494 at 581.201 kb on - strand, within Rru_A0494 at 581.201 kb on - strand, within Rru_A0494 at 581.412 kb on + strand, within Rru_A0495 at 581.466 kb on - strand, within Rru_A0495 at 581.527 kb on - strand, within Rru_A0495 at 581.587 kb on + strand, within Rru_A0495 at 581.588 kb on - strand, within Rru_A0495 at 581.588 kb on - strand, within Rru_A0495 at 581.590 kb on - strand, within Rru_A0495 at 581.704 kb on + strand at 581.704 kb on + strand at 581.757 kb on + strand at 581.762 kb on + strand at 581.762 kb on + strand at 581.763 kb on - strand at 581.934 kb on - strand, within Rru_A0496 at 581.934 kb on - strand, within Rru_A0496 at 581.934 kb on - strand, within Rru_A0496 at 582.222 kb on - strand at 582.222 kb on - strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.291 kb on - strand at 582.372 kb on + strand at 582.372 kb on + strand at 582.372 kb on + strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.666 kb on + strand, within Rru_A0497 at 582.666 kb on + strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 580,459 + Rru_A0494 0.12 -0.1 580,553 - Rru_A0494 0.21 -1.0 580,599 + Rru_A0494 0.26 -0.3 580,599 + Rru_A0494 0.26 +0.1 580,867 + Rru_A0494 0.52 +0.9 580,867 + Rru_A0494 0.52 +0.2 580,868 - Rru_A0494 0.52 -0.0 580,868 - Rru_A0494 0.52 -0.7 580,868 - Rru_A0494 0.52 +0.2 580,990 + Rru_A0494 0.64 -0.4 580,990 + Rru_A0494 0.64 +0.3 580,990 + Rru_A0494 0.64 +0.1 580,991 - Rru_A0494 0.64 -0.2 580,991 - Rru_A0494 0.64 -0.3 581,065 + Rru_A0494 0.71 -0.0 581,200 + Rru_A0494 0.84 +0.2 581,200 + Rru_A0494 0.84 -0.7 581,201 - Rru_A0494 0.84 -0.9 581,201 - Rru_A0494 0.84 +0.3 581,201 - Rru_A0494 0.84 -0.0 581,412 + Rru_A0495 0.12 -0.5 581,466 - Rru_A0495 0.28 -0.5 581,527 - Rru_A0495 0.46 +0.6 581,587 + Rru_A0495 0.64 -0.3 581,588 - Rru_A0495 0.65 -0.0 581,588 - Rru_A0495 0.65 -0.9 581,590 - Rru_A0495 0.65 -1.1 581,704 + -1.5 581,704 + -0.3 581,757 + +0.7 581,762 + +0.2 581,762 + +0.6 581,763 - -0.0 581,934 - Rru_A0496 0.26 -0.8 581,934 - Rru_A0496 0.26 -0.2 581,934 - Rru_A0496 0.26 -0.3 582,222 - -0.1 582,222 - -0.1 582,270 + -0.7 582,270 + -1.3 582,270 + +0.6 582,270 + -0.2 582,270 + -0.6 582,271 - -0.1 582,271 - -0.9 582,271 - +0.1 582,271 - -0.5 582,291 - +0.1 582,372 + +0.7 582,372 + -0.3 582,372 + -0.2 582,373 - +0.1 582,373 - -0.4 582,373 - +0.4 582,373 - +0.6 582,666 + Rru_A0497 0.36 +0.5 582,666 + Rru_A0497 0.36 -0.1 582,667 - Rru_A0497 0.36 -0.6 582,667 - Rru_A0497 0.36 -0.0 582,667 - Rru_A0497 0.36 +0.6 582,667 - Rru_A0497 0.36 -0.7
Or see this region's nucleotide sequence