Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0425 and Rru_A0426 are separated by 148 nucleotides Rru_A0426 and Rru_A0427 are separated by 273 nucleotides Rru_A0427 and Rru_A0428 are separated by 245 nucleotides
Rru_A0425: Rru_A0425 - hypothetical protein (NCBI), at 498,478 to 498,828
_A0425
Rru_A0426: Rru_A0426 - hypothetical protein (NCBI), at 498,977 to 499,318
_A0426
Rru_A0427: Rru_A0427 - Short-chain dehydrogenase/reductase SDR (NCBI), at 499,592 to 500,362
_A0427
Rru_A0428: Rru_A0428 - hypothetical protein (NCBI), at 500,608 to 501,495
_A0428
Position (kb) 499
500
501 Strain fitness (log2 ratio) -2
-1
0
1
2 at 498.846 kb on - strand at 498.851 kb on + strand at 498.851 kb on + strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.914 kb on + strand at 498.978 kb on + strand at 498.979 kb on - strand at 498.979 kb on - strand at 499.063 kb on + strand, within Rru_A0426 at 499.063 kb on + strand, within Rru_A0426 at 499.063 kb on + strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.340 kb on + strand at 499.340 kb on + strand at 499.386 kb on + strand at 499.439 kb on + strand at 499.439 kb on + strand at 499.439 kb on + strand at 499.440 kb on - strand at 499.440 kb on - strand at 499.908 kb on + strand, within Rru_A0427 at 499.908 kb on + strand, within Rru_A0427 at 499.908 kb on + strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 500.292 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.395 kb on + strand at 500.395 kb on + strand at 500.395 kb on + strand at 500.396 kb on - strand at 500.497 kb on - strand at 500.497 kb on - strand at 500.516 kb on - strand at 500.527 kb on - strand at 500.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 498,846 - +0.2 498,851 + -0.5 498,851 + -0.1 498,852 - -0.9 498,852 - -0.6 498,852 - +0.3 498,852 - -0.3 498,914 + +0.1 498,978 + +0.5 498,979 - +0.3 498,979 - -0.2 499,063 + Rru_A0426 0.25 -1.0 499,063 + Rru_A0426 0.25 +0.1 499,063 + Rru_A0426 0.25 -0.2 499,064 - Rru_A0426 0.25 -0.5 499,064 - Rru_A0426 0.25 -0.2 499,064 - Rru_A0426 0.25 -0.2 499,065 + Rru_A0426 0.26 +1.0 499,065 + Rru_A0426 0.26 -0.7 499,065 + Rru_A0426 0.26 +0.3 499,065 + Rru_A0426 0.26 -0.6 499,066 - Rru_A0426 0.26 -1.9 499,066 - Rru_A0426 0.26 +0.5 499,066 - Rru_A0426 0.26 +0.1 499,066 - Rru_A0426 0.26 -0.3 499,340 + -0.5 499,340 + +0.6 499,386 + +1.1 499,439 + -0.9 499,439 + +0.0 499,439 + +0.4 499,440 - +0.6 499,440 - -0.3 499,908 + Rru_A0427 0.41 +0.2 499,908 + Rru_A0427 0.41 -0.1 499,908 + Rru_A0427 0.41 -0.1 499,909 - Rru_A0427 0.41 +0.0 499,909 - Rru_A0427 0.41 -0.4 499,909 - Rru_A0427 0.41 +0.4 499,909 - Rru_A0427 0.41 +1.1 499,909 - Rru_A0427 0.41 +0.3 500,292 + +0.3 500,393 + +0.1 500,393 + +0.7 500,393 + -0.4 500,393 + -0.1 500,394 - -0.2 500,394 - -0.7 500,394 - -0.3 500,394 - +0.3 500,394 - +0.0 500,394 - -0.5 500,394 - +0.2 500,394 - -0.0 500,394 - -0.2 500,394 - -1.1 500,395 + -0.3 500,395 + +2.3 500,395 + -0.1 500,396 - -0.6 500,497 - -0.2 500,497 - +0.1 500,516 - -0.6 500,527 - +0.4 500,527 - -0.8
Or see this region's nucleotide sequence