Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0328 and Rru_A0329 are separated by 330 nucleotides Rru_A0329 and Rru_A0330 are separated by 59 nucleotides
Rru_A0328: Rru_A0328 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 400,635 to 401,267
_A0328
Rru_A0329: Rru_A0329 - hypothetical protein (NCBI), at 401,598 to 401,993
_A0329
Rru_A0330: Rru_A0330 - Transcriptional Regulator, LysR family (NCBI), at 402,053 to 403,063
_A0330
Position (kb) 401
402 Strain fitness (log2 ratio) -1
0
1
2 at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.802 kb on + strand, within Rru_A0328 at 400.878 kb on + strand, within Rru_A0328 at 400.879 kb on - strand, within Rru_A0328 at 400.879 kb on - strand, within Rru_A0328 at 401.034 kb on + strand, within Rru_A0328 at 401.034 kb on + strand, within Rru_A0328 at 401.040 kb on - strand, within Rru_A0328 at 401.127 kb on + strand, within Rru_A0328 at 401.127 kb on + strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.174 kb on + strand, within Rru_A0328 at 401.266 kb on - strand at 401.288 kb on + strand at 401.288 kb on + strand at 401.289 kb on - strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.404 kb on - strand at 401.556 kb on + strand at 401.556 kb on + strand at 401.556 kb on + strand at 401.557 kb on - strand at 401.574 kb on + strand at 401.574 kb on + strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.596 kb on - strand at 401.811 kb on + strand, within Rru_A0329 at 401.811 kb on + strand, within Rru_A0329 at 401.812 kb on - strand, within Rru_A0329 at 401.812 kb on - strand, within Rru_A0329 at 401.812 kb on - strand, within Rru_A0329 at 401.991 kb on + strand at 401.992 kb on - strand at 402.537 kb on + strand, within Rru_A0330 at 402.537 kb on + strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.988 kb on - strand at 402.989 kb on + strand at 402.989 kb on + strand at 402.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 400,607 - +0.3 400,607 - -0.2 400,607 - +0.2 400,607 - +1.6 400,607 - +1.3 400,607 - +1.1 400,607 - +0.4 400,802 + Rru_A0328 0.26 -0.1 400,878 + Rru_A0328 0.38 +0.0 400,879 - Rru_A0328 0.39 -1.1 400,879 - Rru_A0328 0.39 -0.4 401,034 + Rru_A0328 0.63 +0.3 401,034 + Rru_A0328 0.63 +1.8 401,040 - Rru_A0328 0.64 +0.0 401,127 + Rru_A0328 0.78 +0.0 401,127 + Rru_A0328 0.78 +0.9 401,128 - Rru_A0328 0.78 -0.0 401,128 - Rru_A0328 0.78 -0.5 401,128 - Rru_A0328 0.78 -0.5 401,128 - Rru_A0328 0.78 -0.1 401,128 - Rru_A0328 0.78 +0.4 401,128 - Rru_A0328 0.78 -0.0 401,128 - Rru_A0328 0.78 -0.0 401,174 + Rru_A0328 0.85 -0.3 401,266 - -0.5 401,288 + -0.1 401,288 + -0.1 401,289 - +0.1 401,403 + -0.8 401,403 + -0.4 401,403 + -0.0 401,403 + -0.4 401,403 + -0.1 401,403 + -0.1 401,404 - -0.3 401,556 + +0.0 401,556 + -0.6 401,556 + +0.2 401,557 - +0.2 401,574 + +0.5 401,574 + -0.5 401,575 - -0.1 401,575 - +0.6 401,575 - -0.5 401,575 - -0.2 401,575 - -0.6 401,575 - -0.3 401,596 - -0.4 401,811 + Rru_A0329 0.54 -0.2 401,811 + Rru_A0329 0.54 -0.2 401,812 - Rru_A0329 0.54 -0.7 401,812 - Rru_A0329 0.54 -0.2 401,812 - Rru_A0329 0.54 -1.1 401,991 + +0.4 401,992 - -1.1 402,537 + Rru_A0330 0.48 -0.2 402,537 + Rru_A0330 0.48 -0.4 402,538 - Rru_A0330 0.48 +0.3 402,538 - Rru_A0330 0.48 -0.1 402,538 - Rru_A0330 0.48 +0.0 402,538 - Rru_A0330 0.48 -0.2 402,538 - Rru_A0330 0.48 +0.0 402,538 - Rru_A0330 0.48 +0.0 402,988 - -1.3 402,989 + -0.1 402,989 + -1.2 402,990 - -0.4
Or see this region's nucleotide sequence