Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0150 and Rru_A0151 are separated by 61 nucleotides Rru_A0151 and Rru_A0152 overlap by 4 nucleotides Rru_A0152 and Rru_A0153 are separated by 973 nucleotides
Rru_A0150: Rru_A0150 - hypothetical protein (NCBI), at 174,994 to 175,677
_A0150
Rru_A0151: Rru_A0151 - hypothetical protein (NCBI), at 175,739 to 176,482
_A0151
Rru_A0152: Rru_A0152 - hypothetical protein (NCBI), at 176,479 to 176,895
_A0152
Rru_A0153: Rru_A0153 - Endonuclease III/Nth (NCBI), at 177,869 to 178,582
_A0153
Position (kb) 176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.676 kb on - strand at 175.690 kb on + strand at 175.690 kb on + strand at 175.691 kb on - strand at 176.026 kb on + strand, within Rru_A0151 at 176.027 kb on - strand, within Rru_A0151 at 176.027 kb on - strand, within Rru_A0151 at 176.764 kb on + strand, within Rru_A0152 at 176.764 kb on + strand, within Rru_A0152 at 176.764 kb on + strand, within Rru_A0152 at 176.894 kb on - strand at 177.003 kb on + strand at 177.089 kb on + strand at 177.104 kb on - strand at 177.108 kb on - strand at 177.154 kb on + strand at 177.264 kb on - strand at 177.265 kb on + strand at 177.367 kb on - strand at 177.404 kb on - strand at 177.448 kb on - strand at 177.448 kb on - strand at 177.478 kb on - strand at 177.737 kb on + strand at 177.737 kb on + strand at 177.755 kb on + strand at 177.757 kb on + strand at 177.843 kb on + strand at 177.850 kb on + strand at 177.850 kb on + strand at 177.851 kb on - strand at 177.872 kb on + strand at 177.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 175,676 - -0.5 175,690 + +0.1 175,690 + +0.3 175,691 - +1.1 176,026 + Rru_A0151 0.39 +0.5 176,027 - Rru_A0151 0.39 -0.1 176,027 - Rru_A0151 0.39 +0.3 176,764 + Rru_A0152 0.68 +0.5 176,764 + Rru_A0152 0.68 -0.0 176,764 + Rru_A0152 0.68 +0.0 176,894 - +0.5 177,003 + +0.2 177,089 + +0.3 177,104 - -0.3 177,108 - +0.9 177,154 + +0.6 177,264 - -0.2 177,265 + -0.3 177,367 - +1.1 177,404 - +0.0 177,448 - +0.4 177,448 - -0.1 177,478 - +1.8 177,737 + +1.2 177,737 + -0.5 177,755 + +0.6 177,757 + +0.0 177,843 + +0.6 177,850 + -1.6 177,850 + -0.6 177,851 - -0.3 177,872 + -3.0 177,873 - -2.1
Or see this region's nucleotide sequence