Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0149

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0148 and Rru_A0149 are separated by 12 nucleotidesRru_A0149 and Rru_A0150 are separated by 77 nucleotidesRru_A0150 and Rru_A0151 are separated by 61 nucleotides Rru_A0148: Rru_A0148 - GTP-binding protein TypA (NCBI), at 171,839 to 173,680 _A0148 Rru_A0149: Rru_A0149 - PfkB (NCBI), at 173,693 to 174,916 _A0149 Rru_A0150: Rru_A0150 - hypothetical protein (NCBI), at 174,994 to 175,677 _A0150 Rru_A0151: Rru_A0151 - hypothetical protein (NCBI), at 175,739 to 176,482 _A0151 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.773 kb on + strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.774 kb on - strand, within Rru_A0148at 172.849 kb on + strand, within Rru_A0148at 173.020 kb on - strand, within Rru_A0148at 173.029 kb on - strand, within Rru_A0148at 173.704 kb on + strandat 173.704 kb on + strandat 173.704 kb on + strandat 173.705 kb on - strandat 173.705 kb on - strandat 174.211 kb on - strand, within Rru_A0149at 174.222 kb on + strand, within Rru_A0149at 174.222 kb on + strand, within Rru_A0149at 174.222 kb on + strand, within Rru_A0149at 174.223 kb on - strand, within Rru_A0149at 174.223 kb on - strand, within Rru_A0149at 174.223 kb on - strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.295 kb on - strand, within Rru_A0149at 174.295 kb on - strand, within Rru_A0149at 174.493 kb on + strand, within Rru_A0149at 174.493 kb on + strand, within Rru_A0149at 174.494 kb on - strand, within Rru_A0149at 174.544 kb on - strand, within Rru_A0149at 174.695 kb on + strand, within Rru_A0149at 174.695 kb on + strand, within Rru_A0149at 174.695 kb on + strand, within Rru_A0149at 174.696 kb on - strand, within Rru_A0149at 174.696 kb on - strand, within Rru_A0149at 174.696 kb on - strand, within Rru_A0149at 174.696 kb on - strand, within Rru_A0149at 174.787 kb on + strand, within Rru_A0149at 174.850 kb on + strandat 174.850 kb on + strandat 174.850 kb on + strandat 174.852 kb on + strandat 174.852 kb on + strandat 174.852 kb on + strandat 174.852 kb on + strandat 174.853 kb on - strandat 174.853 kb on - strandat 174.853 kb on - strandat 175.087 kb on + strand, within Rru_A0150at 175.371 kb on + strand, within Rru_A0150at 175.371 kb on + strand, within Rru_A0150at 175.372 kb on - strand, within Rru_A0150at 175.374 kb on + strand, within Rru_A0150at 175.375 kb on - strand, within Rru_A0150at 175.375 kb on - strand, within Rru_A0150at 175.393 kb on + strand, within Rru_A0150at 175.394 kb on - strand, within Rru_A0150at 175.430 kb on - strand, within Rru_A0150at 175.444 kb on + strand, within Rru_A0150at 175.445 kb on - strand, within Rru_A0150at 175.676 kb on - strandat 175.690 kb on + strandat 175.690 kb on + strandat 175.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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172,773 + Rru_A0148 0.51 +0.6
172,773 + Rru_A0148 0.51 -1.2
172,773 + Rru_A0148 0.51 -1.1
172,774 - Rru_A0148 0.51 -0.2
172,849 + Rru_A0148 0.55 +0.4
173,020 - Rru_A0148 0.64 -0.8
173,029 - Rru_A0148 0.65 -1.8
173,704 + -0.1
173,704 + +0.5
173,704 + -0.3
173,705 - -0.3
173,705 - -0.3
174,211 - Rru_A0149 0.42 +0.2
174,222 + Rru_A0149 0.43 +0.5
174,222 + Rru_A0149 0.43 -0.4
174,222 + Rru_A0149 0.43 -0.4
174,223 - Rru_A0149 0.43 +0.1
174,223 - Rru_A0149 0.43 +0.9
174,223 - Rru_A0149 0.43 -0.0
174,294 + Rru_A0149 0.49 +2.0
174,294 + Rru_A0149 0.49 -0.5
174,294 + Rru_A0149 0.49 -0.2
174,294 + Rru_A0149 0.49 -0.3
174,294 + Rru_A0149 0.49 +0.4
174,294 + Rru_A0149 0.49 +0.3
174,294 + Rru_A0149 0.49 -0.8
174,295 - Rru_A0149 0.49 -0.7
174,295 - Rru_A0149 0.49 +0.3
174,493 + Rru_A0149 0.65 -1.3
174,493 + Rru_A0149 0.65 -0.9
174,494 - Rru_A0149 0.65 +1.4
174,544 - Rru_A0149 0.70 +0.1
174,695 + Rru_A0149 0.82 +1.5
174,695 + Rru_A0149 0.82 -0.3
174,695 + Rru_A0149 0.82 -0.4
174,696 - Rru_A0149 0.82 -0.4
174,696 - Rru_A0149 0.82 +0.2
174,696 - Rru_A0149 0.82 -1.1
174,696 - Rru_A0149 0.82 -0.3
174,787 + Rru_A0149 0.89 -0.2
174,850 + -0.3
174,850 + +0.4
174,850 + -0.5
174,852 + +0.2
174,852 + -0.3
174,852 + -0.0
174,852 + +0.6
174,853 - +0.2
174,853 - -0.0
174,853 - +0.4
175,087 + Rru_A0150 0.14 +0.5
175,371 + Rru_A0150 0.55 +1.2
175,371 + Rru_A0150 0.55 -0.6
175,372 - Rru_A0150 0.55 -0.8
175,374 + Rru_A0150 0.56 -0.4
175,375 - Rru_A0150 0.56 +1.2
175,375 - Rru_A0150 0.56 -1.9
175,393 + Rru_A0150 0.58 +1.2
175,394 - Rru_A0150 0.58 +1.2
175,430 - Rru_A0150 0.64 -0.4
175,444 + Rru_A0150 0.66 -0.4
175,445 - Rru_A0150 0.66 +0.2
175,676 - -0.5
175,690 + +0.1
175,690 + +0.3
175,691 - +1.1

Or see this region's nucleotide sequence