Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0139

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0138 and Rru_A0139 are separated by 278 nucleotidesRru_A0139 and Rru_A0140 are separated by 72 nucleotidesRru_A0140 and Rru_A0141 are separated by 32 nucleotides Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004 _A0138 Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636 _A0139 Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479 _A0140 Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495 _A0141 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 162.371 kb on + strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.542 kb on + strand, within Rru_A0138at 162.543 kb on - strand, within Rru_A0138at 162.667 kb on + strand, within Rru_A0138at 162.667 kb on + strand, within Rru_A0138at 162.668 kb on - strand, within Rru_A0138at 163.061 kb on + strandat 163.138 kb on + strandat 163.156 kb on + strandat 163.157 kb on - strandat 163.163 kb on + strandat 163.163 kb on + strandat 163.163 kb on + strandat 163.164 kb on - strandat 163.164 kb on - strandat 163.164 kb on - strandat 163.166 kb on + strandat 163.195 kb on + strandat 163.196 kb on - strandat 163.196 kb on - strandat 163.196 kb on - strandat 163.268 kb on + strandat 163.320 kb on + strand, within Rru_A0139at 163.321 kb on - strand, within Rru_A0139at 163.403 kb on + strand, within Rru_A0139at 163.404 kb on - strand, within Rru_A0139at 163.404 kb on - strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.517 kb on - strand, within Rru_A0139at 163.676 kb on - strandat 163.676 kb on - strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.687 kb on - strandat 163.717 kb on + strandat 163.718 kb on - strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.731 kb on - strandat 163.731 kb on - strandat 163.776 kb on - strandat 163.776 kb on - strandat 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.829 kb on + strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.967 kb on - strand, within Rru_A0140at 164.075 kb on + strand, within Rru_A0140at 164.076 kb on - strand, within Rru_A0140at 164.115 kb on + strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.119 kb on - strand, within Rru_A0140at 164.119 kb on - strand, within Rru_A0140at 164.188 kb on + strand, within Rru_A0140at 164.189 kb on - strand, within Rru_A0140at 164.305 kb on - strand, within Rru_A0140at 164.305 kb on - strand, within Rru_A0140at 164.402 kb on + strand, within Rru_A0140at 164.403 kb on - strandat 164.403 kb on - strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.466 kb on - strandat 164.466 kb on - strandat 164.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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162,371 + Rru_A0138 0.54 -1.8
162,372 - Rru_A0138 0.55 -0.3
162,372 - Rru_A0138 0.55 -1.0
162,542 + Rru_A0138 0.67 -0.1
162,543 - Rru_A0138 0.67 +0.7
162,667 + Rru_A0138 0.76 +0.3
162,667 + Rru_A0138 0.76 -0.1
162,668 - Rru_A0138 0.76 +0.3
163,061 + +0.5
163,138 + -0.7
163,156 + +0.6
163,157 - +0.1
163,163 + -1.8
163,163 + -1.1
163,163 + -1.4
163,164 - -0.5
163,164 - +0.0
163,164 - +1.2
163,166 + -0.8
163,195 + -0.8
163,196 - +0.0
163,196 - +0.4
163,196 - -0.2
163,268 + -0.0
163,320 + Rru_A0139 0.10 +0.2
163,321 - Rru_A0139 0.11 +0.5
163,403 + Rru_A0139 0.34 -0.2
163,404 - Rru_A0139 0.34 +1.0
163,404 - Rru_A0139 0.34 +1.6
163,516 + Rru_A0139 0.66 +0.6
163,516 + Rru_A0139 0.66 +0.3
163,516 + Rru_A0139 0.66 +0.3
163,517 - Rru_A0139 0.66 +0.8
163,676 - +0.6
163,676 - -0.6
163,684 + +0.1
163,684 + -0.5
163,684 + -0.2
163,684 + -0.7
163,684 + -0.5
163,685 - +0.1
163,685 - -0.3
163,685 - -0.0
163,685 - +0.2
163,685 - -0.1
163,685 - +0.2
163,685 - +0.2
163,685 - +0.3
163,687 - +0.4
163,717 + -1.3
163,718 - -0.4
163,730 + -0.5
163,730 + +1.5
163,730 + +0.2
163,731 - +0.0
163,731 - -0.8
163,776 - +0.2
163,776 - -0.0
163,827 + Rru_A0140 0.15 -0.6
163,827 + Rru_A0140 0.15 +0.2
163,827 + Rru_A0140 0.15 +0.4
163,827 + Rru_A0140 0.15 +0.1
163,827 + Rru_A0140 0.15 +0.1
163,827 + Rru_A0140 0.15 +0.1
163,827 + Rru_A0140 0.15 +0.2
163,827 + Rru_A0140 0.15 +1.8
163,828 - Rru_A0140 0.15 -0.0
163,828 - Rru_A0140 0.15 -0.1
163,828 - Rru_A0140 0.15 -0.4
163,828 - Rru_A0140 0.15 -0.4
163,828 - Rru_A0140 0.15 -0.4
163,829 + Rru_A0140 0.16 +0.0
163,830 - Rru_A0140 0.16 -0.5
163,830 - Rru_A0140 0.16 -0.0
163,830 - Rru_A0140 0.16 +0.4
163,830 - Rru_A0140 0.16 -0.1
163,830 - Rru_A0140 0.16 +0.2
163,868 + Rru_A0140 0.21 -0.3
163,868 + Rru_A0140 0.21 +0.2
163,868 + Rru_A0140 0.21 -0.3
163,869 - Rru_A0140 0.21 +0.6
163,869 - Rru_A0140 0.21 -0.1
163,964 + Rru_A0140 0.33 -0.0
163,964 + Rru_A0140 0.33 +0.1
163,964 + Rru_A0140 0.33 -0.3
163,964 + Rru_A0140 0.33 +0.0
163,964 + Rru_A0140 0.33 -0.4
163,965 - Rru_A0140 0.33 -0.3
163,965 - Rru_A0140 0.33 -0.1
163,965 - Rru_A0140 0.33 +0.3
163,965 - Rru_A0140 0.33 -0.9
163,965 - Rru_A0140 0.33 -0.0
163,967 - Rru_A0140 0.33 +0.2
164,075 + Rru_A0140 0.47 -0.1
164,076 - Rru_A0140 0.48 +0.4
164,115 + Rru_A0140 0.53 -0.1
164,116 - Rru_A0140 0.53 -0.4
164,116 - Rru_A0140 0.53 +0.2
164,116 - Rru_A0140 0.53 -1.1
164,118 + Rru_A0140 0.53 +0.7
164,118 + Rru_A0140 0.53 +0.5
164,118 + Rru_A0140 0.53 -0.3
164,119 - Rru_A0140 0.53 -0.3
164,119 - Rru_A0140 0.53 -0.4
164,188 + Rru_A0140 0.62 -0.2
164,189 - Rru_A0140 0.62 -0.4
164,305 - Rru_A0140 0.77 -0.3
164,305 - Rru_A0140 0.77 -0.9
164,402 + Rru_A0140 0.90 +0.1
164,403 - -0.6
164,403 - -0.3
164,465 + +0.1
164,465 + +0.8
164,465 + -0.1
164,465 + -0.1
164,465 + +0.6
164,465 + +2.0
164,466 - +1.2
164,466 - +0.1
164,555 + -0.2

Or see this region's nucleotide sequence