Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0064

Experiment: SMN_rich_noKan

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0063 and Rru_A0064 are separated by 8 nucleotidesRru_A0064 and Rru_A0065 overlap by 4 nucleotides Rru_A0063: Rru_A0063 - Amine oxidase (NCBI), at 71,633 to 72,931 _A0063 Rru_A0064: Rru_A0064 - squalene-phytoene synthase (NCBI), at 72,940 to 75,003 _A0064 Rru_A0065: Rru_A0065 - Squalene/phytoene synthase (NCBI), at 75,000 to 75,893 _A0065 Position (kb) 72 73 74 75 76Strain fitness (log2 ratio) -1 0 1at 74.139 kb on - strand, within Rru_A0064at 74.691 kb on - strand, within Rru_A0064at 74.880 kb on + strandat 75.933 kb on - strandat 75.933 kb on - strandat 75.979 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
remove
74,139 - Rru_A0064 0.58 -0.0
74,691 - Rru_A0064 0.85 -0.6
74,880 + -1.0
75,933 - +1.2
75,933 - +0.1
75,979 - -0.2

Or see this region's nucleotide sequence