Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0053 and Rru_A0054 are separated by 637 nucleotides Rru_A0054 and Rru_A0055 are separated by 84 nucleotides
Rru_A0053: Rru_A0053 - Carboxyl transferase (NCBI), at 55,947 to 57,479
_A0053
Rru_A0054: Rru_A0054 - Deoxyxylulose-5-phosphate synthase (NCBI), at 58,117 to 60,054
_A0054
Rru_A0055: Rru_A0055 - VacJ-like lipoprotein (NCBI), at 60,139 to 61,011
_A0055
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 57.395 kb on + strand at 57.395 kb on + strand at 57.395 kb on + strand at 57.395 kb on + strand at 57.396 kb on - strand at 57.396 kb on - strand at 57.396 kb on - strand at 57.479 kb on + strand at 57.479 kb on + strand at 57.480 kb on - strand at 57.494 kb on - strand at 57.494 kb on - strand at 57.821 kb on + strand at 57.821 kb on + strand at 57.821 kb on + strand at 57.822 kb on - strand at 57.823 kb on + strand at 57.823 kb on + strand at 57.823 kb on + strand at 57.824 kb on - strand at 57.824 kb on - strand at 57.827 kb on + strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.939 kb on - strand at 58.003 kb on + strand at 58.008 kb on + strand at 58.009 kb on - strand at 58.009 kb on - strand at 58.810 kb on + strand, within Rru_A0054 at 58.810 kb on + strand, within Rru_A0054 at 58.865 kb on - strand, within Rru_A0054 at 58.865 kb on - strand, within Rru_A0054 at 60.071 kb on + strand at 60.072 kb on - strand at 60.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 57,395 + -0.3 57,395 + +0.2 57,395 + -1.0 57,395 + -0.4 57,396 - +1.4 57,396 - +0.2 57,396 - -0.2 57,479 + -0.3 57,479 + -0.2 57,480 - -0.0 57,494 - +0.1 57,494 - -0.5 57,821 + -0.2 57,821 + +0.2 57,821 + +0.1 57,822 - +0.9 57,823 + -0.8 57,823 + -0.3 57,823 + -0.0 57,824 - -0.2 57,824 - -1.0 57,827 + -1.1 57,896 - -0.2 57,896 - +0.2 57,896 - +0.6 57,896 - -0.4 57,896 - -0.5 57,939 - -2.4 58,003 + +0.4 58,008 + -0.6 58,009 - -0.3 58,009 - -0.2 58,810 + Rru_A0054 0.36 -0.2 58,810 + Rru_A0054 0.36 +1.2 58,865 - Rru_A0054 0.39 +0.6 58,865 - Rru_A0054 0.39 +0.0 60,071 + +0.2 60,072 - -0.4 60,131 - -0.5
Or see this region's nucleotide sequence