Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0024 and Rru_B0025 are separated by 136 nucleotides Rru_B0025 and Rru_B0026 are separated by 338 nucleotides
Rru_B0024: Rru_B0024 - RepA-related protein (NCBI), at 22,802 to 23,734
_B0024
Rru_B0025: Rru_B0025 - hypothetical protein (NCBI), at 23,871 to 24,122
_B0025
Rru_B0026: Rru_B0026 - SapC (NCBI), at 24,461 to 25,255
_B0026
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.884 kb on + strand at 22.885 kb on - strand at 23.043 kb on - strand, within Rru_B0024 at 23.116 kb on + strand, within Rru_B0024 at 23.117 kb on - strand, within Rru_B0024 at 23.117 kb on - strand, within Rru_B0024 at 23.118 kb on + strand, within Rru_B0024 at 23.118 kb on + strand, within Rru_B0024 at 23.119 kb on - strand, within Rru_B0024 at 23.119 kb on - strand, within Rru_B0024 at 23.148 kb on + strand, within Rru_B0024 at 23.149 kb on - strand, within Rru_B0024 at 23.184 kb on + strand, within Rru_B0024 at 23.184 kb on + strand, within Rru_B0024 at 23.184 kb on + strand, within Rru_B0024 at 23.272 kb on + strand, within Rru_B0024 at 23.272 kb on + strand, within Rru_B0024 at 23.273 kb on - strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.322 kb on - strand, within Rru_B0024 at 23.356 kb on + strand, within Rru_B0024 at 23.357 kb on - strand, within Rru_B0024 at 23.425 kb on + strand, within Rru_B0024 at 23.426 kb on - strand, within Rru_B0024 at 23.432 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.474 kb on - strand, within Rru_B0024 at 23.502 kb on + strand, within Rru_B0024 at 23.503 kb on - strand, within Rru_B0024 at 23.503 kb on - strand, within Rru_B0024 at 23.689 kb on + strand at 23.801 kb on + strand at 23.801 kb on + strand at 23.801 kb on + strand at 23.824 kb on + strand at 23.825 kb on - strand at 23.828 kb on + strand at 23.828 kb on + strand at 23.828 kb on + strand at 23.829 kb on - strand at 23.829 kb on - strand at 23.872 kb on + strand at 23.872 kb on + strand at 23.873 kb on - strand at 23.873 kb on - strand at 23.886 kb on + strand at 23.972 kb on + strand, within Rru_B0025 at 23.973 kb on - strand, within Rru_B0025 at 23.974 kb on + strand, within Rru_B0025 at 23.974 kb on + strand, within Rru_B0025 at 23.974 kb on + strand, within Rru_B0025 at 23.975 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.095 kb on + strand, within Rru_B0025 at 24.209 kb on - strand at 24.249 kb on + strand at 24.251 kb on + strand at 24.251 kb on + strand at 24.252 kb on - strand at 24.252 kb on - strand at 24.252 kb on - strand at 24.331 kb on + strand at 24.331 kb on + strand at 24.331 kb on + strand at 24.331 kb on + strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.375 kb on + strand at 24.375 kb on + strand at 24.375 kb on + strand at 24.375 kb on + strand at 24.376 kb on - strand at 24.422 kb on + strand at 24.422 kb on + strand at 24.423 kb on - strand at 24.423 kb on - strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.530 kb on + strand at 24.531 kb on - strand at 24.589 kb on + strand, within Rru_B0026 at 24.669 kb on + strand, within Rru_B0026 at 24.670 kb on - strand, within Rru_B0026 at 24.722 kb on + strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.746 kb on + strand, within Rru_B0026 at 24.746 kb on + strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 25.050 kb on + strand, within Rru_B0026
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 22,884 + -0.1 22,885 - +0.4 23,043 - Rru_B0024 0.26 +1.7 23,116 + Rru_B0024 0.34 +0.5 23,117 - Rru_B0024 0.34 -0.7 23,117 - Rru_B0024 0.34 -2.0 23,118 + Rru_B0024 0.34 -0.2 23,118 + Rru_B0024 0.34 +1.7 23,119 - Rru_B0024 0.34 +0.0 23,119 - Rru_B0024 0.34 +0.7 23,148 + Rru_B0024 0.37 +0.3 23,149 - Rru_B0024 0.37 +0.2 23,184 + Rru_B0024 0.41 -0.8 23,184 + Rru_B0024 0.41 +1.5 23,184 + Rru_B0024 0.41 +0.9 23,272 + Rru_B0024 0.50 +0.1 23,272 + Rru_B0024 0.50 +0.5 23,273 - Rru_B0024 0.50 +0.1 23,321 + Rru_B0024 0.56 +0.7 23,321 + Rru_B0024 0.56 -0.3 23,321 + Rru_B0024 0.56 +0.4 23,321 + Rru_B0024 0.56 -0.6 23,321 + Rru_B0024 0.56 +1.3 23,321 + Rru_B0024 0.56 -0.2 23,322 - Rru_B0024 0.56 +0.7 23,356 + Rru_B0024 0.59 +0.2 23,357 - Rru_B0024 0.59 -0.7 23,425 + Rru_B0024 0.67 -1.4 23,426 - Rru_B0024 0.67 +0.2 23,432 + Rru_B0024 0.68 -0.1 23,454 + Rru_B0024 0.70 -0.3 23,454 + Rru_B0024 0.70 -0.6 23,454 + Rru_B0024 0.70 +1.1 23,454 + Rru_B0024 0.70 +0.6 23,454 + Rru_B0024 0.70 -0.1 23,455 - Rru_B0024 0.70 +0.2 23,455 - Rru_B0024 0.70 -0.8 23,455 - Rru_B0024 0.70 -0.1 23,455 - Rru_B0024 0.70 -0.4 23,455 - Rru_B0024 0.70 +0.2 23,455 - Rru_B0024 0.70 -0.6 23,455 - Rru_B0024 0.70 +0.5 23,474 - Rru_B0024 0.72 -2.4 23,502 + Rru_B0024 0.75 -0.2 23,503 - Rru_B0024 0.75 +0.6 23,503 - Rru_B0024 0.75 +0.7 23,689 + -0.3 23,801 + +0.3 23,801 + +0.7 23,801 + -1.1 23,824 + +0.3 23,825 - -1.6 23,828 + -0.6 23,828 + +0.1 23,828 + -1.7 23,829 - -1.3 23,829 - -0.8 23,872 + +0.3 23,872 + -1.3 23,873 - +1.7 23,873 - -1.0 23,886 + -0.2 23,972 + Rru_B0025 0.40 -1.2 23,973 - Rru_B0025 0.40 -1.1 23,974 + Rru_B0025 0.41 -0.0 23,974 + Rru_B0025 0.41 -1.1 23,974 + Rru_B0025 0.41 +0.0 23,975 - Rru_B0025 0.41 +0.6 24,022 - Rru_B0025 0.60 -1.0 24,022 - Rru_B0025 0.60 +0.2 24,022 - Rru_B0025 0.60 -0.4 24,022 - Rru_B0025 0.60 -0.1 24,095 + Rru_B0025 0.89 +0.2 24,209 - +0.2 24,249 + +1.0 24,251 + +0.5 24,251 + -1.0 24,252 - +0.9 24,252 - +1.7 24,252 - -1.8 24,331 + +1.7 24,331 + -1.7 24,331 + +0.3 24,331 + +0.2 24,332 - +0.3 24,332 - -0.9 24,332 - -1.0 24,332 - -0.1 24,332 - +0.2 24,332 - -0.2 24,333 + +0.0 24,333 + +1.3 24,333 + -0.2 24,333 + +0.7 24,333 + -0.1 24,334 - +0.5 24,334 - +1.7 24,334 - +0.2 24,334 - -0.2 24,334 - -0.4 24,334 - -0.4 24,334 - +0.2 24,375 + +0.2 24,375 + +0.4 24,375 + +0.5 24,375 + +0.0 24,376 - -0.5 24,422 + +0.7 24,422 + +0.4 24,423 - -0.8 24,423 - -0.9 24,452 + -0.7 24,452 + -0.0 24,452 + -0.0 24,452 + +0.3 24,452 + +0.7 24,453 - +0.6 24,453 - -0.2 24,453 - -0.6 24,453 - +0.6 24,453 - -0.5 24,453 - -0.3 24,453 - -0.4 24,453 - +1.5 24,453 - -0.5 24,453 - +0.2 24,453 - -0.3 24,530 + +0.4 24,531 - -0.1 24,589 + Rru_B0026 0.16 -0.3 24,669 + Rru_B0026 0.26 -0.3 24,670 - Rru_B0026 0.26 +0.3 24,722 + Rru_B0026 0.33 -0.8 24,723 - Rru_B0026 0.33 +1.7 24,723 - Rru_B0026 0.33 -0.3 24,723 - Rru_B0026 0.33 +0.2 24,724 + Rru_B0026 0.33 -0.0 24,724 + Rru_B0026 0.33 +1.8 24,724 + Rru_B0026 0.33 -0.8 24,724 + Rru_B0026 0.33 -0.7 24,724 + Rru_B0026 0.33 +0.8 24,725 - Rru_B0026 0.33 +0.2 24,725 - Rru_B0026 0.33 +0.2 24,725 - Rru_B0026 0.33 -0.5 24,725 - Rru_B0026 0.33 -0.1 24,725 - Rru_B0026 0.33 -0.1 24,725 - Rru_B0026 0.33 +0.5 24,725 - Rru_B0026 0.33 -0.1 24,725 - Rru_B0026 0.33 -0.1 24,725 - Rru_B0026 0.33 +0.0 24,746 + Rru_B0026 0.36 +1.5 24,746 + Rru_B0026 0.36 +0.6 24,917 - Rru_B0026 0.57 +0.0 24,917 - Rru_B0026 0.57 +0.9 24,917 - Rru_B0026 0.57 -0.4 25,050 + Rru_B0026 0.74 +1.2
Or see this region's nucleotide sequence