Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF10446

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsrM and DVU1291 are separated by 34 nucleotidesDVU1291 and DVU1292 overlap by 71 nucleotidesDVU1292 and DORF10446 are separated by 95 nucleotidesDORF10446 and DVU1294 are separated by 90 nucleotidesDVU1294 and sat are separated by 151 nucleotides DVU1290: DsrM - Inner membrane protein binds 2 heme b (Shelley Haveman), at 1,384,047 to 1,385,051 DsrM DVU1291: DVU1291 - hypothetical protein (TIGR), at 1,385,086 to 1,385,625 DVU1291 DVU1292: DVU1292 - hypothetical protein (TIGR), at 1,385,555 to 1,385,728 DVU1292 DORF10446: DORF10446 - SEED: FIG00604570: hypothetical protein, at 1,385,824 to 1,386,771 DORF10446 DVU1294: DVU1294 - conserved hypothetical protein (TIGR), at 1,386,862 to 1,387,560 DVU1294 DVU1295: sat - sulfate adenylyltransferase (TIGR), at 1,387,712 to 1,388,995 sat Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -3 -2 -1 0 1at 1385.651 kb on - strand, within DVU1292at 1385.695 kb on - strand, within DVU1292at 1385.721 kb on - strandat 1385.723 kb on + strandat 1385.860 kb on + strandat 1385.955 kb on + strand, within DORF10446at 1385.981 kb on - strand, within DORF10446at 1386.023 kb on + strand, within DORF10446at 1386.113 kb on + strand, within DORF10446at 1386.289 kb on + strand, within DORF10446at 1386.333 kb on + strand, within DORF10446at 1386.430 kb on + strand, within DORF10446at 1386.433 kb on - strand, within DORF10446at 1386.473 kb on + strand, within DORF10446at 1386.517 kb on + strand, within DORF10446at 1386.549 kb on - strand, within DORF10446at 1386.631 kb on - strand, within DORF10446at 1386.704 kb on + strandat 1386.727 kb on + strandat 1386.822 kb on - strandat 1386.826 kb on + strandat 1386.836 kb on + strandat 1386.836 kb on + strandat 1386.836 kb on + strandat 1386.836 kb on + strandat 1386.844 kb on - strandat 1386.856 kb on + strandat 1386.892 kb on + strandat 1387.023 kb on + strand, within DVU1294at 1387.068 kb on + strand, within DVU1294at 1387.267 kb on + strand, within DVU1294at 1387.465 kb on - strand, within DVU1294at 1387.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,385,651 - DVU1292 0.55 -2.5
1,385,695 - DVU1292 0.80 -0.6
1,385,721 - -1.3
1,385,723 + -0.3
1,385,860 + +1.1
1,385,955 + DORF10446 0.14 -0.6
1,385,981 - DORF10446 0.17 +0.1
1,386,023 + DORF10446 0.21 -0.9
1,386,113 + DORF10446 0.30 -1.2
1,386,289 + DORF10446 0.49 -1.1
1,386,333 + DORF10446 0.54 -2.8
1,386,430 + DORF10446 0.64 -1.3
1,386,433 - DORF10446 0.64 -1.5
1,386,473 + DORF10446 0.68 -1.2
1,386,517 + DORF10446 0.73 -1.4
1,386,549 - DORF10446 0.76 -1.6
1,386,631 - DORF10446 0.85 -2.0
1,386,704 + -1.7
1,386,727 + -0.9
1,386,822 - -0.6
1,386,826 + -1.5
1,386,836 + -0.8
1,386,836 + -0.8
1,386,836 + +1.2
1,386,836 + +0.5
1,386,844 - -0.7
1,386,856 + -0.8
1,386,892 + -0.0
1,387,023 + DVU1294 0.23 -0.0
1,387,068 + DVU1294 0.29 +0.5
1,387,267 + DVU1294 0.58 -0.1
1,387,465 - DVU1294 0.86 -0.8
1,387,640 + -0.4

Or see this region's nucleotide sequence