Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.813.1 and Xcc-8004.816.1 are separated by 421 nucleotides Xcc-8004.816.1 and Xcc-8004.817.1 are separated by 709 nucleotides
Xcc-8004.813.1: Xcc-8004.813.1 - Predicted Zn-dependent peptidases, at 757,346 to 760,225
Xcc-8004.813.1
Xcc-8004.816.1: Xcc-8004.816.1 - histidine kinase/response regulator hybrid protein, at 760,647 to 763,244
Xcc-8004.816.1
Xcc-8004.817.1: Xcc-8004.817.1 - chemotaxis protein, at 763,954 to 766,098
Xcc-8004.817.1
Position (kb) 760
761
762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 759.687 kb on + strand, within Xcc-8004.813.1 at 759.688 kb on - strand, within Xcc-8004.813.1 at 759.808 kb on + strand, within Xcc-8004.813.1 at 759.840 kb on + strand, within Xcc-8004.813.1 at 759.840 kb on + strand, within Xcc-8004.813.1 at 759.840 kb on + strand, within Xcc-8004.813.1 at 759.841 kb on - strand, within Xcc-8004.813.1 at 759.841 kb on - strand, within Xcc-8004.813.1 at 759.841 kb on - strand, within Xcc-8004.813.1 at 760.092 kb on + strand at 760.092 kb on + strand at 760.093 kb on - strand at 760.412 kb on - strand at 760.412 kb on - strand at 760.412 kb on - strand at 760.432 kb on - strand at 760.545 kb on + strand at 760.545 kb on + strand at 760.602 kb on - strand at 760.778 kb on + strand at 760.778 kb on + strand at 760.778 kb on + strand at 760.778 kb on + strand at 760.779 kb on - strand at 760.779 kb on - strand at 760.893 kb on + strand at 760.893 kb on + strand at 760.995 kb on + strand, within Xcc-8004.816.1 at 760.995 kb on + strand, within Xcc-8004.816.1 at 760.996 kb on - strand, within Xcc-8004.816.1 at 760.996 kb on - strand, within Xcc-8004.816.1 at 760.996 kb on - strand, within Xcc-8004.816.1 at 760.996 kb on - strand, within Xcc-8004.816.1 at 760.996 kb on - strand, within Xcc-8004.816.1 at 761.028 kb on + strand, within Xcc-8004.816.1 at 761.035 kb on - strand, within Xcc-8004.816.1 at 761.329 kb on - strand, within Xcc-8004.816.1 at 761.377 kb on + strand, within Xcc-8004.816.1 at 761.676 kb on + strand, within Xcc-8004.816.1 at 761.677 kb on - strand, within Xcc-8004.816.1 at 761.775 kb on + strand, within Xcc-8004.816.1 at 761.775 kb on + strand, within Xcc-8004.816.1 at 761.775 kb on + strand, within Xcc-8004.816.1 at 761.775 kb on + strand, within Xcc-8004.816.1 at 761.775 kb on + strand, within Xcc-8004.816.1 at 761.776 kb on - strand, within Xcc-8004.816.1 at 761.776 kb on - strand, within Xcc-8004.816.1 at 761.776 kb on - strand, within Xcc-8004.816.1 at 761.776 kb on - strand, within Xcc-8004.816.1 at 761.913 kb on + strand, within Xcc-8004.816.1 at 762.085 kb on - strand, within Xcc-8004.816.1 at 762.196 kb on - strand, within Xcc-8004.816.1 at 762.213 kb on + strand, within Xcc-8004.816.1 at 762.214 kb on - strand, within Xcc-8004.816.1 at 762.238 kb on + strand, within Xcc-8004.816.1 at 762.272 kb on + strand, within Xcc-8004.816.1 at 762.582 kb on + strand, within Xcc-8004.816.1 at 762.582 kb on + strand, within Xcc-8004.816.1 at 762.583 kb on - strand, within Xcc-8004.816.1 at 762.583 kb on - strand, within Xcc-8004.816.1 at 763.180 kb on - strand at 763.180 kb on - strand at 763.180 kb on - strand at 763.403 kb on + strand at 763.429 kb on + strand at 763.429 kb on + strand at 763.430 kb on - strand at 763.567 kb on + strand at 763.567 kb on + strand at 763.601 kb on + strand at 763.601 kb on + strand at 763.606 kb on - strand at 763.854 kb on + strand at 763.891 kb on - strand at 763.901 kb on + strand at 763.902 kb on - strand at 763.946 kb on - strand at 763.966 kb on + strand at 763.967 kb on - strand at 763.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 759,687 + Xcc-8004.813.1 0.81 -1.9 759,688 - Xcc-8004.813.1 0.81 +0.2 759,808 + Xcc-8004.813.1 0.85 -3.0 759,840 + Xcc-8004.813.1 0.87 +0.7 759,840 + Xcc-8004.813.1 0.87 +1.0 759,840 + Xcc-8004.813.1 0.87 -0.8 759,841 - Xcc-8004.813.1 0.87 +0.8 759,841 - Xcc-8004.813.1 0.87 -2.5 759,841 - Xcc-8004.813.1 0.87 -2.5 760,092 + +0.8 760,092 + -1.6 760,093 - -0.7 760,412 - -0.0 760,412 - -0.3 760,412 - +1.6 760,432 - -3.7 760,545 + -3.0 760,545 + +0.3 760,602 - +1.0 760,778 + +0.9 760,778 + -0.3 760,778 + -1.6 760,778 + +0.1 760,779 - +0.3 760,779 - -1.4 760,893 + +0.8 760,893 + +0.6 760,995 + Xcc-8004.816.1 0.13 +0.2 760,995 + Xcc-8004.816.1 0.13 +0.8 760,996 - Xcc-8004.816.1 0.13 +0.6 760,996 - Xcc-8004.816.1 0.13 -0.2 760,996 - Xcc-8004.816.1 0.13 +0.2 760,996 - Xcc-8004.816.1 0.13 -0.3 760,996 - Xcc-8004.816.1 0.13 +0.3 761,028 + Xcc-8004.816.1 0.15 +2.0 761,035 - Xcc-8004.816.1 0.15 -0.8 761,329 - Xcc-8004.816.1 0.26 +3.0 761,377 + Xcc-8004.816.1 0.28 -0.2 761,676 + Xcc-8004.816.1 0.40 -0.2 761,677 - Xcc-8004.816.1 0.40 +0.1 761,775 + Xcc-8004.816.1 0.43 -0.5 761,775 + Xcc-8004.816.1 0.43 +0.6 761,775 + Xcc-8004.816.1 0.43 +2.2 761,775 + Xcc-8004.816.1 0.43 +0.3 761,775 + Xcc-8004.816.1 0.43 +1.4 761,776 - Xcc-8004.816.1 0.43 -0.3 761,776 - Xcc-8004.816.1 0.43 +0.3 761,776 - Xcc-8004.816.1 0.43 +0.1 761,776 - Xcc-8004.816.1 0.43 -0.9 761,913 + Xcc-8004.816.1 0.49 +0.4 762,085 - Xcc-8004.816.1 0.55 +1.5 762,196 - Xcc-8004.816.1 0.60 -0.2 762,213 + Xcc-8004.816.1 0.60 -0.1 762,214 - Xcc-8004.816.1 0.60 +2.0 762,238 + Xcc-8004.816.1 0.61 -0.9 762,272 + Xcc-8004.816.1 0.63 -1.2 762,582 + Xcc-8004.816.1 0.74 -1.7 762,582 + Xcc-8004.816.1 0.74 +0.4 762,583 - Xcc-8004.816.1 0.75 +1.8 762,583 - Xcc-8004.816.1 0.75 +0.5 763,180 - +0.0 763,180 - -0.5 763,180 - -1.0 763,403 + +0.0 763,429 + -2.8 763,429 + +0.7 763,430 - +0.1 763,567 + -0.5 763,567 + +0.7 763,601 + +0.7 763,601 + +0.7 763,606 - -2.0 763,854 + -0.9 763,891 - -0.8 763,901 + +0.1 763,902 - +1.3 763,946 - -1.3 763,966 + +0.7 763,967 - -0.0 763,967 - -1.4
Or see this region's nucleotide sequence