Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4871.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4870.1 and Xcc-8004.4871.1 are separated by 84 nucleotidesXcc-8004.4871.1 and Xcc-8004.4872.1 are separated by 55 nucleotides Xcc-8004.4870.1: Xcc-8004.4870.1 - Mobile element protein, at 4,628,502 to 4,629,482 Xcc-8004.4870.1 Xcc-8004.4871.1: Xcc-8004.4871.1 - Phage tail completion protein, at 4,629,567 to 4,629,686 Xcc-8004.4871.1 Xcc-8004.4872.1: Xcc-8004.4872.1 - Mobile element protein, at 4,629,742 to 4,631,166 Xcc-8004.4872.1 Position (kb) 4629 4630Strain fitness (log2 ratio) -1 0 1at 4629.558 kb on + strandat 4629.615 kb on + strand, within Xcc-8004.4871.1at 4629.616 kb on - strand, within Xcc-8004.4871.1at 4629.715 kb on + strandat 4629.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,629,558 + +0.5
4,629,615 + Xcc-8004.4871.1 0.40 +0.1
4,629,616 - Xcc-8004.4871.1 0.41 +1.3
4,629,715 + -0.6
4,629,716 - +0.5

Or see this region's nucleotide sequence