Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.474.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.473.1 and Xcc-8004.474.1 are separated by 12 nucleotidesXcc-8004.474.1 and Xcc-8004.475.1 are separated by 253 nucleotides Xcc-8004.473.1: Xcc-8004.473.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 435,747 to 436,865 Xcc-8004.473.1 Xcc-8004.474.1: Xcc-8004.474.1 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 436,878 to 437,954 Xcc-8004.474.1 Xcc-8004.475.1: Xcc-8004.475.1 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 438,208 to 439,071 Xcc-8004.475.1 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 435.981 kb on + strand, within Xcc-8004.473.1at 435.981 kb on + strand, within Xcc-8004.473.1at 435.982 kb on - strand, within Xcc-8004.473.1at 435.982 kb on - strand, within Xcc-8004.473.1at 436.156 kb on + strand, within Xcc-8004.473.1at 436.156 kb on + strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.273 kb on + strand, within Xcc-8004.473.1at 436.274 kb on - strand, within Xcc-8004.473.1at 436.303 kb on + strand, within Xcc-8004.473.1at 436.303 kb on + strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.425 kb on - strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.525 kb on + strand, within Xcc-8004.473.1at 436.525 kb on + strand, within Xcc-8004.473.1at 436.526 kb on - strand, within Xcc-8004.473.1at 436.528 kb on + strand, within Xcc-8004.473.1at 436.528 kb on + strand, within Xcc-8004.473.1at 436.528 kb on + strand, within Xcc-8004.473.1at 436.529 kb on - strand, within Xcc-8004.473.1at 436.529 kb on - strand, within Xcc-8004.473.1at 436.529 kb on - strand, within Xcc-8004.473.1at 436.562 kb on - strand, within Xcc-8004.473.1at 436.724 kb on + strand, within Xcc-8004.473.1at 436.724 kb on + strand, within Xcc-8004.473.1at 436.725 kb on - strand, within Xcc-8004.473.1at 437.110 kb on + strand, within Xcc-8004.474.1at 437.111 kb on - strand, within Xcc-8004.474.1at 437.111 kb on - strand, within Xcc-8004.474.1at 437.134 kb on + strand, within Xcc-8004.474.1at 437.134 kb on + strand, within Xcc-8004.474.1at 437.135 kb on - strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.624 kb on - strand, within Xcc-8004.474.1at 437.624 kb on - strand, within Xcc-8004.474.1at 437.624 kb on - strand, within Xcc-8004.474.1at 437.720 kb on - strand, within Xcc-8004.474.1at 437.720 kb on - strand, within Xcc-8004.474.1at 437.840 kb on - strand, within Xcc-8004.474.1at 437.975 kb on + strandat 437.975 kb on + strandat 437.975 kb on + strandat 437.975 kb on + strandat 437.975 kb on + strandat 437.975 kb on + strandat 437.975 kb on + strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 437.976 kb on - strandat 438.066 kb on + strandat 438.067 kb on - strandat 438.067 kb on - strandat 438.070 kb on + strandat 438.071 kb on - strandat 438.072 kb on + strandat 438.073 kb on - strandat 438.173 kb on + strandat 438.173 kb on + strandat 438.173 kb on + strandat 438.174 kb on - strandat 438.174 kb on - strandat 438.285 kb on + strandat 438.285 kb on + strandat 438.376 kb on + strand, within Xcc-8004.475.1at 438.376 kb on + strand, within Xcc-8004.475.1at 438.377 kb on - strand, within Xcc-8004.475.1at 438.377 kb on - strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.584 kb on - strand, within Xcc-8004.475.1at 438.584 kb on - strand, within Xcc-8004.475.1at 438.584 kb on - strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.902 kb on - strand, within Xcc-8004.475.1at 438.902 kb on - strand, within Xcc-8004.475.1at 438.913 kb on + strand, within Xcc-8004.475.1at 438.913 kb on + strand, within Xcc-8004.475.1at 438.913 kb on + strand, within Xcc-8004.475.1at 438.914 kb on - strand, within Xcc-8004.475.1at 438.937 kb on + strand, within Xcc-8004.475.1at 438.937 kb on + strand, within Xcc-8004.475.1at 438.938 kb on - strand, within Xcc-8004.475.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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435,981 + Xcc-8004.473.1 0.21 +1.0
435,981 + Xcc-8004.473.1 0.21 +0.7
435,982 - Xcc-8004.473.1 0.21 +1.4
435,982 - Xcc-8004.473.1 0.21 +1.0
436,156 + Xcc-8004.473.1 0.37 +0.9
436,156 + Xcc-8004.473.1 0.37 +1.5
436,157 - Xcc-8004.473.1 0.37 -0.3
436,157 - Xcc-8004.473.1 0.37 +0.1
436,157 - Xcc-8004.473.1 0.37 -0.7
436,157 - Xcc-8004.473.1 0.37 +1.7
436,157 - Xcc-8004.473.1 0.37 -0.9
436,157 - Xcc-8004.473.1 0.37 +1.2
436,157 - Xcc-8004.473.1 0.37 -0.6
436,157 - Xcc-8004.473.1 0.37 -0.3
436,157 - Xcc-8004.473.1 0.37 -0.6
436,273 + Xcc-8004.473.1 0.47 -0.9
436,274 - Xcc-8004.473.1 0.47 +2.6
436,303 + Xcc-8004.473.1 0.50 -3.4
436,303 + Xcc-8004.473.1 0.50 +1.1
436,304 - Xcc-8004.473.1 0.50 +0.6
436,304 - Xcc-8004.473.1 0.50 +1.1
436,304 - Xcc-8004.473.1 0.50 -0.4
436,304 - Xcc-8004.473.1 0.50 +0.8
436,304 - Xcc-8004.473.1 0.50 -1.1
436,425 - Xcc-8004.473.1 0.61 -1.9
436,475 + Xcc-8004.473.1 0.65 +1.4
436,475 + Xcc-8004.473.1 0.65 +1.4
436,475 + Xcc-8004.473.1 0.65 -0.6
436,475 + Xcc-8004.473.1 0.65 -0.8
436,475 + Xcc-8004.473.1 0.65 +0.1
436,475 + Xcc-8004.473.1 0.65 +0.3
436,476 - Xcc-8004.473.1 0.65 -0.0
436,476 - Xcc-8004.473.1 0.65 +0.5
436,476 - Xcc-8004.473.1 0.65 +1.0
436,476 - Xcc-8004.473.1 0.65 +0.8
436,476 - Xcc-8004.473.1 0.65 -0.3
436,476 - Xcc-8004.473.1 0.65 -0.5
436,476 - Xcc-8004.473.1 0.65 +2.0
436,525 + Xcc-8004.473.1 0.70 -0.1
436,525 + Xcc-8004.473.1 0.70 +1.8
436,526 - Xcc-8004.473.1 0.70 +1.0
436,528 + Xcc-8004.473.1 0.70 +0.7
436,528 + Xcc-8004.473.1 0.70 +1.4
436,528 + Xcc-8004.473.1 0.70 +0.5
436,529 - Xcc-8004.473.1 0.70 +0.1
436,529 - Xcc-8004.473.1 0.70 -0.2
436,529 - Xcc-8004.473.1 0.70 -2.2
436,562 - Xcc-8004.473.1 0.73 +0.4
436,724 + Xcc-8004.473.1 0.87 +0.9
436,724 + Xcc-8004.473.1 0.87 -1.3
436,725 - Xcc-8004.473.1 0.87 -0.0
437,110 + Xcc-8004.474.1 0.22 -0.9
437,111 - Xcc-8004.474.1 0.22 +1.3
437,111 - Xcc-8004.474.1 0.22 +0.7
437,134 + Xcc-8004.474.1 0.24 +0.7
437,134 + Xcc-8004.474.1 0.24 -0.5
437,135 - Xcc-8004.474.1 0.24 +1.2
437,308 + Xcc-8004.474.1 0.40 -0.5
437,308 + Xcc-8004.474.1 0.40 +0.4
437,308 + Xcc-8004.474.1 0.40 +0.7
437,308 + Xcc-8004.474.1 0.40 -1.3
437,308 + Xcc-8004.474.1 0.40 -0.6
437,308 + Xcc-8004.474.1 0.40 -0.4
437,308 + Xcc-8004.474.1 0.40 +1.3
437,623 + Xcc-8004.474.1 0.69 -1.6
437,623 + Xcc-8004.474.1 0.69 -2.8
437,623 + Xcc-8004.474.1 0.69 +1.1
437,623 + Xcc-8004.474.1 0.69 -2.2
437,623 + Xcc-8004.474.1 0.69 -0.5
437,624 - Xcc-8004.474.1 0.69 +0.1
437,624 - Xcc-8004.474.1 0.69 -0.8
437,624 - Xcc-8004.474.1 0.69 -0.5
437,720 - Xcc-8004.474.1 0.78 -0.2
437,720 - Xcc-8004.474.1 0.78 -0.7
437,840 - Xcc-8004.474.1 0.89 -0.5
437,975 + +1.5
437,975 + +0.7
437,975 + +0.5
437,975 + -0.8
437,975 + +3.1
437,975 + -0.4
437,975 + -0.0
437,976 - -2.2
437,976 - +0.1
437,976 - +0.8
437,976 - +2.7
437,976 - +0.7
437,976 - +0.6
437,976 - +0.2
437,976 - -2.2
437,976 - +0.5
437,976 - -1.1
438,066 + +0.1
438,067 - -2.1
438,067 - +0.3
438,070 + -0.4
438,071 - -1.9
438,072 + -3.4
438,073 - -0.6
438,173 + -1.5
438,173 + -1.5
438,173 + +0.5
438,174 - -1.4
438,174 - +0.1
438,285 + +1.7
438,285 + -0.0
438,376 + Xcc-8004.475.1 0.19 +0.4
438,376 + Xcc-8004.475.1 0.19 +1.6
438,377 - Xcc-8004.475.1 0.20 -2.4
438,377 - Xcc-8004.475.1 0.20 -1.0
438,538 + Xcc-8004.475.1 0.38 -0.1
438,538 + Xcc-8004.475.1 0.38 +0.2
438,538 + Xcc-8004.475.1 0.38 -0.8
438,538 + Xcc-8004.475.1 0.38 +0.3
438,539 - Xcc-8004.475.1 0.38 +0.0
438,539 - Xcc-8004.475.1 0.38 -1.0
438,539 - Xcc-8004.475.1 0.38 +0.9
438,539 - Xcc-8004.475.1 0.38 -0.0
438,539 - Xcc-8004.475.1 0.38 +0.4
438,583 + Xcc-8004.475.1 0.43 +0.9
438,583 + Xcc-8004.475.1 0.43 -0.1
438,583 + Xcc-8004.475.1 0.43 -1.5
438,583 + Xcc-8004.475.1 0.43 +0.4
438,584 - Xcc-8004.475.1 0.44 +1.0
438,584 - Xcc-8004.475.1 0.44 -0.5
438,584 - Xcc-8004.475.1 0.44 -0.2
438,901 + Xcc-8004.475.1 0.80 +1.2
438,901 + Xcc-8004.475.1 0.80 -0.6
438,901 + Xcc-8004.475.1 0.80 +0.3
438,901 + Xcc-8004.475.1 0.80 -1.3
438,902 - Xcc-8004.475.1 0.80 +1.8
438,902 - Xcc-8004.475.1 0.80 +0.7
438,913 + Xcc-8004.475.1 0.82 +0.3
438,913 + Xcc-8004.475.1 0.82 +1.1
438,913 + Xcc-8004.475.1 0.82 +0.6
438,914 - Xcc-8004.475.1 0.82 -0.3
438,937 + Xcc-8004.475.1 0.84 +0.2
438,937 + Xcc-8004.475.1 0.84 -0.7
438,938 - Xcc-8004.475.1 0.84 +1.7

Or see this region's nucleotide sequence