Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.44.1 and Xcc-8004.45.1 are separated by 202 nucleotides Xcc-8004.45.1 and Xcc-8004.46.1 are separated by 65 nucleotides Xcc-8004.46.1 and Xcc-8004.47.1 are separated by 115 nucleotides
Xcc-8004.44.1: Xcc-8004.44.1 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 39,604 to 44,076
Xcc-8004.44.1
Xcc-8004.45.1: Xcc-8004.45.1 - hypothetical protein, at 44,279 to 44,674
Xcc-8004.45.1
Xcc-8004.46.1: Xcc-8004.46.1 - hypothetical protein, at 44,740 to 46,071
Xcc-8004.46.1
Xcc-8004.47.1: Xcc-8004.47.1 - Phospholipid N-methyltransferase, at 46,187 to 46,765
Xcc-8004.47.1
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.796 kb on + strand at 43.797 kb on - strand at 43.807 kb on + strand at 43.807 kb on + strand at 43.807 kb on + strand at 43.808 kb on - strand at 44.033 kb on + strand at 44.033 kb on + strand at 44.034 kb on - strand at 44.034 kb on - strand at 44.034 kb on - strand at 44.042 kb on + strand at 44.042 kb on + strand at 44.042 kb on + strand at 44.042 kb on + strand at 44.042 kb on + strand at 44.164 kb on + strand at 44.191 kb on + strand at 44.191 kb on + strand at 44.191 kb on + strand at 44.192 kb on - strand at 44.200 kb on - strand at 44.200 kb on - strand at 44.590 kb on + strand, within Xcc-8004.45.1 at 44.590 kb on + strand, within Xcc-8004.45.1 at 44.590 kb on + strand, within Xcc-8004.45.1 at 44.591 kb on - strand, within Xcc-8004.45.1 at 44.591 kb on - strand, within Xcc-8004.45.1 at 44.591 kb on - strand, within Xcc-8004.45.1 at 44.693 kb on + strand at 44.693 kb on + strand at 44.693 kb on + strand at 44.693 kb on + strand at 44.693 kb on + strand at 44.693 kb on + strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.694 kb on - strand at 44.757 kb on + strand at 44.757 kb on + strand at 44.757 kb on + strand at 44.758 kb on - strand at 44.824 kb on - strand at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.965 kb on + strand, within Xcc-8004.46.1 at 44.966 kb on - strand, within Xcc-8004.46.1 at 44.966 kb on - strand, within Xcc-8004.46.1 at 44.966 kb on - strand, within Xcc-8004.46.1 at 45.100 kb on + strand, within Xcc-8004.46.1 at 45.101 kb on - strand, within Xcc-8004.46.1 at 45.101 kb on - strand, within Xcc-8004.46.1 at 45.101 kb on - strand, within Xcc-8004.46.1 at 45.178 kb on + strand, within Xcc-8004.46.1 at 45.178 kb on + strand, within Xcc-8004.46.1 at 45.377 kb on - strand, within Xcc-8004.46.1 at 45.377 kb on - strand, within Xcc-8004.46.1 at 45.397 kb on + strand, within Xcc-8004.46.1 at 45.397 kb on + strand, within Xcc-8004.46.1 at 45.398 kb on - strand, within Xcc-8004.46.1 at 45.568 kb on + strand, within Xcc-8004.46.1 at 45.622 kb on + strand, within Xcc-8004.46.1 at 45.622 kb on + strand, within Xcc-8004.46.1 at 45.623 kb on - strand, within Xcc-8004.46.1 at 45.623 kb on - strand, within Xcc-8004.46.1 at 45.623 kb on - strand, within Xcc-8004.46.1 at 45.823 kb on + strand, within Xcc-8004.46.1 at 45.823 kb on + strand, within Xcc-8004.46.1 at 45.824 kb on - strand, within Xcc-8004.46.1 at 45.824 kb on - strand, within Xcc-8004.46.1 at 45.824 kb on - strand, within Xcc-8004.46.1 at 45.824 kb on - strand, within Xcc-8004.46.1 at 45.824 kb on - strand, within Xcc-8004.46.1 at 46.197 kb on + strand at 46.197 kb on + strand at 46.198 kb on - strand at 46.218 kb on + strand at 46.219 kb on - strand at 46.219 kb on - strand at 46.219 kb on - strand at 46.222 kb on + strand at 46.223 kb on - strand at 46.223 kb on - strand at 46.245 kb on + strand, within Xcc-8004.47.1 at 46.246 kb on - strand, within Xcc-8004.47.1 at 46.246 kb on - strand, within Xcc-8004.47.1 at 46.246 kb on - strand, within Xcc-8004.47.1 at 46.321 kb on - strand, within Xcc-8004.47.1 at 46.324 kb on + strand, within Xcc-8004.47.1 at 46.325 kb on - strand, within Xcc-8004.47.1 at 46.325 kb on - strand, within Xcc-8004.47.1 at 46.332 kb on + strand, within Xcc-8004.47.1 at 46.332 kb on + strand, within Xcc-8004.47.1 at 46.332 kb on + strand, within Xcc-8004.47.1 at 46.332 kb on + strand, within Xcc-8004.47.1 at 46.332 kb on + strand, within Xcc-8004.47.1 at 46.332 kb on + strand, within Xcc-8004.47.1 at 46.333 kb on - strand, within Xcc-8004.47.1 at 46.333 kb on - strand, within Xcc-8004.47.1 at 46.333 kb on - strand, within Xcc-8004.47.1 at 46.333 kb on - strand, within Xcc-8004.47.1 at 46.333 kb on - strand, within Xcc-8004.47.1 at 46.333 kb on - strand, within Xcc-8004.47.1 at 46.545 kb on + strand, within Xcc-8004.47.1 at 46.545 kb on + strand, within Xcc-8004.47.1 at 46.545 kb on + strand, within Xcc-8004.47.1 at 46.546 kb on + strand, within Xcc-8004.47.1 at 46.645 kb on + strand, within Xcc-8004.47.1 at 46.646 kb on - strand, within Xcc-8004.47.1 at 46.646 kb on - strand, within Xcc-8004.47.1 at 46.753 kb on - strand at 46.753 kb on - strand at 46.753 kb on - strand at 46.753 kb on - strand at 46.753 kb on - strand at 46.811 kb on + strand at 46.811 kb on + strand at 46.812 kb on - strand at 46.812 kb on - strand at 46.812 kb on - strand at 46.974 kb on + strand at 46.974 kb on + strand at 46.974 kb on + strand at 46.974 kb on + strand at 46.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 43,796 + +0.1 43,797 - -1.1 43,807 + -0.3 43,807 + -0.9 43,807 + -0.7 43,808 - -2.5 44,033 + -2.2 44,033 + +0.1 44,034 - +0.4 44,034 - +1.8 44,034 - +0.4 44,042 + -0.6 44,042 + -1.5 44,042 + +0.4 44,042 + -3.0 44,042 + +1.0 44,164 + -1.0 44,191 + +1.2 44,191 + +1.5 44,191 + +0.9 44,192 - -0.2 44,200 - +1.2 44,200 - -0.8 44,590 + Xcc-8004.45.1 0.79 -0.7 44,590 + Xcc-8004.45.1 0.79 -1.7 44,590 + Xcc-8004.45.1 0.79 -0.8 44,591 - Xcc-8004.45.1 0.79 +0.2 44,591 - Xcc-8004.45.1 0.79 -0.8 44,591 - Xcc-8004.45.1 0.79 -1.4 44,693 + +2.5 44,693 + -0.1 44,693 + +0.2 44,693 + -1.8 44,693 + +0.2 44,693 + -1.2 44,694 - -1.0 44,694 - +0.4 44,694 - +0.3 44,694 - -0.1 44,694 - -0.8 44,694 - -0.1 44,694 - -1.7 44,694 - -2.1 44,694 - -0.1 44,694 - +1.2 44,694 - -1.3 44,694 - +0.8 44,757 + +0.5 44,757 + -1.2 44,757 + -2.2 44,758 - -0.1 44,824 - -1.8 44,965 + Xcc-8004.46.1 0.17 -1.7 44,965 + Xcc-8004.46.1 0.17 +1.8 44,965 + Xcc-8004.46.1 0.17 -2.1 44,965 + Xcc-8004.46.1 0.17 +0.4 44,965 + Xcc-8004.46.1 0.17 +0.9 44,965 + Xcc-8004.46.1 0.17 -1.3 44,965 + Xcc-8004.46.1 0.17 +2.7 44,965 + Xcc-8004.46.1 0.17 -0.8 44,965 + Xcc-8004.46.1 0.17 -1.8 44,965 + Xcc-8004.46.1 0.17 +3.3 44,965 + Xcc-8004.46.1 0.17 +0.4 44,965 + Xcc-8004.46.1 0.17 +0.1 44,965 + Xcc-8004.46.1 0.17 +0.2 44,966 - Xcc-8004.46.1 0.17 -1.2 44,966 - Xcc-8004.46.1 0.17 +0.1 44,966 - Xcc-8004.46.1 0.17 +0.8 45,100 + Xcc-8004.46.1 0.27 +0.7 45,101 - Xcc-8004.46.1 0.27 -2.0 45,101 - Xcc-8004.46.1 0.27 -0.6 45,101 - Xcc-8004.46.1 0.27 -0.5 45,178 + Xcc-8004.46.1 0.33 -1.6 45,178 + Xcc-8004.46.1 0.33 +2.0 45,377 - Xcc-8004.46.1 0.48 +0.7 45,377 - Xcc-8004.46.1 0.48 +1.3 45,397 + Xcc-8004.46.1 0.49 -3.1 45,397 + Xcc-8004.46.1 0.49 -0.4 45,398 - Xcc-8004.46.1 0.49 +0.7 45,568 + Xcc-8004.46.1 0.62 +0.1 45,622 + Xcc-8004.46.1 0.66 +1.0 45,622 + Xcc-8004.46.1 0.66 -0.0 45,623 - Xcc-8004.46.1 0.66 +1.5 45,623 - Xcc-8004.46.1 0.66 -0.0 45,623 - Xcc-8004.46.1 0.66 +1.5 45,823 + Xcc-8004.46.1 0.81 -1.4 45,823 + Xcc-8004.46.1 0.81 -0.4 45,824 - Xcc-8004.46.1 0.81 -0.1 45,824 - Xcc-8004.46.1 0.81 -0.4 45,824 - Xcc-8004.46.1 0.81 -1.7 45,824 - Xcc-8004.46.1 0.81 +1.1 45,824 - Xcc-8004.46.1 0.81 +0.3 46,197 + +0.0 46,197 + -0.1 46,198 - -0.5 46,218 + +1.2 46,219 - +0.7 46,219 - +1.9 46,219 - +1.6 46,222 + -0.4 46,223 - +0.4 46,223 - +0.4 46,245 + Xcc-8004.47.1 0.10 -0.2 46,246 - Xcc-8004.47.1 0.10 +0.6 46,246 - Xcc-8004.47.1 0.10 -0.5 46,246 - Xcc-8004.47.1 0.10 +1.9 46,321 - Xcc-8004.47.1 0.23 -0.6 46,324 + Xcc-8004.47.1 0.24 +2.4 46,325 - Xcc-8004.47.1 0.24 +1.1 46,325 - Xcc-8004.47.1 0.24 -0.9 46,332 + Xcc-8004.47.1 0.25 +0.5 46,332 + Xcc-8004.47.1 0.25 +2.1 46,332 + Xcc-8004.47.1 0.25 -0.3 46,332 + Xcc-8004.47.1 0.25 +0.3 46,332 + Xcc-8004.47.1 0.25 -0.1 46,332 + Xcc-8004.47.1 0.25 +0.0 46,333 - Xcc-8004.47.1 0.25 -1.3 46,333 - Xcc-8004.47.1 0.25 +0.3 46,333 - Xcc-8004.47.1 0.25 -1.0 46,333 - Xcc-8004.47.1 0.25 -0.6 46,333 - Xcc-8004.47.1 0.25 -0.2 46,333 - Xcc-8004.47.1 0.25 +0.8 46,545 + Xcc-8004.47.1 0.62 +0.3 46,545 + Xcc-8004.47.1 0.62 +0.4 46,545 + Xcc-8004.47.1 0.62 -0.1 46,546 + Xcc-8004.47.1 0.62 -0.6 46,645 + Xcc-8004.47.1 0.79 -1.5 46,646 - Xcc-8004.47.1 0.79 +0.2 46,646 - Xcc-8004.47.1 0.79 +1.5 46,753 - -1.8 46,753 - +0.1 46,753 - +0.4 46,753 - -1.7 46,753 - -0.8 46,811 + +0.7 46,811 + +0.7 46,812 - -0.6 46,812 - -3.2 46,812 - -2.4 46,974 + -0.4 46,974 + +1.1 46,974 + -2.2 46,974 + +0.5 46,975 - -0.3
Or see this region's nucleotide sequence