Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4491.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4490.1 and Xcc-8004.4491.1 overlap by 16 nucleotidesXcc-8004.4491.1 and Xcc-8004.4492.1 overlap by 4 nucleotidesXcc-8004.4492.1 and Xcc-8004.4493.1 overlap by 14 nucleotides Xcc-8004.4490.1: Xcc-8004.4490.1 - Lipopolysaccharide biosynthesis protein RffA, at 4,297,786 to 4,298,889 Xcc-8004.4490.1 Xcc-8004.4491.1: Xcc-8004.4491.1 - Glycosyltransferase, at 4,298,874 to 4,299,845 Xcc-8004.4491.1 Xcc-8004.4492.1: Xcc-8004.4492.1 - Bifunctional acetyl transferase/isomerase, at 4,299,842 to 4,300,771 Xcc-8004.4492.1 Xcc-8004.4493.1: Xcc-8004.4493.1 - sugar translocase, at 4,300,758 to 4,301,207 Xcc-8004.4493.1 Position (kb) 4298 4299 4300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4297.882 kb on + strandat 4297.883 kb on - strandat 4297.883 kb on - strandat 4297.883 kb on - strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.198 kb on - strand, within Xcc-8004.4490.1at 4298.344 kb on + strand, within Xcc-8004.4490.1at 4298.345 kb on - strand, within Xcc-8004.4490.1at 4298.438 kb on - strand, within Xcc-8004.4490.1at 4298.438 kb on - strand, within Xcc-8004.4490.1at 4298.455 kb on + strand, within Xcc-8004.4490.1at 4298.456 kb on - strand, within Xcc-8004.4490.1at 4298.456 kb on - strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.651 kb on - strand, within Xcc-8004.4490.1at 4298.651 kb on - strand, within Xcc-8004.4490.1at 4298.931 kb on + strandat 4298.931 kb on + strandat 4299.045 kb on + strand, within Xcc-8004.4491.1at 4299.046 kb on - strand, within Xcc-8004.4491.1at 4299.046 kb on - strand, within Xcc-8004.4491.1at 4299.231 kb on + strand, within Xcc-8004.4491.1at 4299.232 kb on - strand, within Xcc-8004.4491.1at 4299.246 kb on + strand, within Xcc-8004.4491.1at 4299.246 kb on + strand, within Xcc-8004.4491.1at 4299.247 kb on - strand, within Xcc-8004.4491.1at 4299.247 kb on - strand, within Xcc-8004.4491.1at 4299.266 kb on - strand, within Xcc-8004.4491.1at 4299.371 kb on + strand, within Xcc-8004.4491.1at 4299.544 kb on - strand, within Xcc-8004.4491.1at 4299.688 kb on - strand, within Xcc-8004.4491.1at 4299.688 kb on - strand, within Xcc-8004.4491.1at 4299.689 kb on + strand, within Xcc-8004.4491.1at 4299.690 kb on - strand, within Xcc-8004.4491.1at 4299.690 kb on - strand, within Xcc-8004.4491.1at 4299.746 kb on + strand, within Xcc-8004.4491.1at 4299.755 kb on + strandat 4299.756 kb on - strandat 4299.756 kb on - strandat 4299.756 kb on - strandat 4299.756 kb on - strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.760 kb on - strandat 4299.760 kb on - strandat 4299.783 kb on - strandat 4299.800 kb on - strandat 4299.836 kb on + strandat 4299.836 kb on + strandat 4299.837 kb on - strandat 4299.924 kb on + strandat 4299.924 kb on + strandat 4299.924 kb on + strandat 4299.924 kb on + strandat 4299.990 kb on + strand, within Xcc-8004.4492.1at 4299.990 kb on + strand, within Xcc-8004.4492.1at 4299.991 kb on - strand, within Xcc-8004.4492.1at 4299.991 kb on - strand, within Xcc-8004.4492.1at 4299.991 kb on - strand, within Xcc-8004.4492.1at 4300.118 kb on + strand, within Xcc-8004.4492.1at 4300.118 kb on + strand, within Xcc-8004.4492.1at 4300.119 kb on - strand, within Xcc-8004.4492.1at 4300.295 kb on + strand, within Xcc-8004.4492.1at 4300.296 kb on - strand, within Xcc-8004.4492.1at 4300.296 kb on - strand, within Xcc-8004.4492.1at 4300.296 kb on - strand, within Xcc-8004.4492.1at 4300.351 kb on + strand, within Xcc-8004.4492.1at 4300.352 kb on - strand, within Xcc-8004.4492.1at 4300.519 kb on + strand, within Xcc-8004.4492.1at 4300.519 kb on + strand, within Xcc-8004.4492.1at 4300.520 kb on - strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.659 kb on - strand, within Xcc-8004.4492.1at 4300.659 kb on - strand, within Xcc-8004.4492.1at 4300.664 kb on + strand, within Xcc-8004.4492.1at 4300.664 kb on + strand, within Xcc-8004.4492.1at 4300.664 kb on + strand, within Xcc-8004.4492.1at 4300.665 kb on - strand, within Xcc-8004.4492.1at 4300.707 kb on - strandat 4300.733 kb on + strandat 4300.734 kb on - strandat 4300.838 kb on - strand, within Xcc-8004.4493.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,297,882 + -0.5
4,297,883 - -0.1
4,297,883 - -2.6
4,297,883 - +0.8
4,297,885 + -0.3
4,297,885 + +0.4
4,297,885 + +1.6
4,297,885 + +1.1
4,297,885 + +0.9
4,297,885 + +0.6
4,297,885 + -0.7
4,297,885 + +0.3
4,297,885 + +1.0
4,297,886 - -0.0
4,297,886 - +0.3
4,297,886 - -0.9
4,297,886 - +1.7
4,297,886 - -2.0
4,297,886 - +1.4
4,297,886 - -2.9
4,297,886 - -0.8
4,298,053 + Xcc-8004.4490.1 0.24 +0.6
4,298,053 + Xcc-8004.4490.1 0.24 -1.4
4,298,053 + Xcc-8004.4490.1 0.24 +1.4
4,298,053 + Xcc-8004.4490.1 0.24 +1.0
4,298,053 + Xcc-8004.4490.1 0.24 -0.6
4,298,053 + Xcc-8004.4490.1 0.24 -0.4
4,298,053 + Xcc-8004.4490.1 0.24 -0.1
4,298,054 - Xcc-8004.4490.1 0.24 +0.7
4,298,054 - Xcc-8004.4490.1 0.24 +0.1
4,298,054 - Xcc-8004.4490.1 0.24 -1.4
4,298,054 - Xcc-8004.4490.1 0.24 +0.0
4,298,054 - Xcc-8004.4490.1 0.24 -1.7
4,298,054 - Xcc-8004.4490.1 0.24 -1.1
4,298,054 - Xcc-8004.4490.1 0.24 +0.4
4,298,054 - Xcc-8004.4490.1 0.24 +0.5
4,298,197 + Xcc-8004.4490.1 0.37 +0.8
4,298,197 + Xcc-8004.4490.1 0.37 +0.3
4,298,197 + Xcc-8004.4490.1 0.37 -0.5
4,298,197 + Xcc-8004.4490.1 0.37 +0.4
4,298,198 - Xcc-8004.4490.1 0.37 -1.5
4,298,344 + Xcc-8004.4490.1 0.51 -0.0
4,298,345 - Xcc-8004.4490.1 0.51 -1.1
4,298,438 - Xcc-8004.4490.1 0.59 -1.0
4,298,438 - Xcc-8004.4490.1 0.59 +1.7
4,298,455 + Xcc-8004.4490.1 0.61 -1.8
4,298,456 - Xcc-8004.4490.1 0.61 -0.6
4,298,456 - Xcc-8004.4490.1 0.61 -1.4
4,298,523 + Xcc-8004.4490.1 0.67 -0.4
4,298,523 + Xcc-8004.4490.1 0.67 -2.4
4,298,523 + Xcc-8004.4490.1 0.67 +0.6
4,298,524 - Xcc-8004.4490.1 0.67 -1.3
4,298,524 - Xcc-8004.4490.1 0.67 -2.8
4,298,524 - Xcc-8004.4490.1 0.67 -2.0
4,298,524 - Xcc-8004.4490.1 0.67 -0.5
4,298,524 - Xcc-8004.4490.1 0.67 -0.2
4,298,524 - Xcc-8004.4490.1 0.67 +1.0
4,298,524 - Xcc-8004.4490.1 0.67 -0.2
4,298,650 + Xcc-8004.4490.1 0.78 -0.5
4,298,650 + Xcc-8004.4490.1 0.78 -0.6
4,298,650 + Xcc-8004.4490.1 0.78 -1.4
4,298,651 - Xcc-8004.4490.1 0.78 -1.4
4,298,651 - Xcc-8004.4490.1 0.78 +0.9
4,298,931 + -0.5
4,298,931 + -0.2
4,299,045 + Xcc-8004.4491.1 0.18 -1.8
4,299,046 - Xcc-8004.4491.1 0.18 -2.4
4,299,046 - Xcc-8004.4491.1 0.18 -0.2
4,299,231 + Xcc-8004.4491.1 0.37 -0.7
4,299,232 - Xcc-8004.4491.1 0.37 -1.7
4,299,246 + Xcc-8004.4491.1 0.38 +1.4
4,299,246 + Xcc-8004.4491.1 0.38 +0.9
4,299,247 - Xcc-8004.4491.1 0.38 -0.5
4,299,247 - Xcc-8004.4491.1 0.38 -1.1
4,299,266 - Xcc-8004.4491.1 0.40 +0.9
4,299,371 + Xcc-8004.4491.1 0.51 -0.5
4,299,544 - Xcc-8004.4491.1 0.69 +0.1
4,299,688 - Xcc-8004.4491.1 0.84 +0.7
4,299,688 - Xcc-8004.4491.1 0.84 +0.2
4,299,689 + Xcc-8004.4491.1 0.84 -1.4
4,299,690 - Xcc-8004.4491.1 0.84 +0.5
4,299,690 - Xcc-8004.4491.1 0.84 -1.8
4,299,746 + Xcc-8004.4491.1 0.90 -0.6
4,299,755 + +2.6
4,299,756 - +1.0
4,299,756 - -0.3
4,299,756 - +0.9
4,299,756 - -2.2
4,299,759 + -0.1
4,299,759 + -0.8
4,299,759 + -1.5
4,299,759 + +0.6
4,299,760 - +0.4
4,299,760 - +0.3
4,299,783 - -0.6
4,299,800 - +1.0
4,299,836 + +1.2
4,299,836 + +1.1
4,299,837 - +0.5
4,299,924 + +0.8
4,299,924 + +1.6
4,299,924 + -1.2
4,299,924 + -0.9
4,299,990 + Xcc-8004.4492.1 0.16 -1.9
4,299,990 + Xcc-8004.4492.1 0.16 -0.5
4,299,991 - Xcc-8004.4492.1 0.16 +0.6
4,299,991 - Xcc-8004.4492.1 0.16 +0.3
4,299,991 - Xcc-8004.4492.1 0.16 +0.7
4,300,118 + Xcc-8004.4492.1 0.30 +0.9
4,300,118 + Xcc-8004.4492.1 0.30 -0.0
4,300,119 - Xcc-8004.4492.1 0.30 +0.6
4,300,295 + Xcc-8004.4492.1 0.49 +1.9
4,300,296 - Xcc-8004.4492.1 0.49 +0.4
4,300,296 - Xcc-8004.4492.1 0.49 -0.0
4,300,296 - Xcc-8004.4492.1 0.49 -0.7
4,300,351 + Xcc-8004.4492.1 0.55 -0.0
4,300,352 - Xcc-8004.4492.1 0.55 +0.7
4,300,519 + Xcc-8004.4492.1 0.73 +0.8
4,300,519 + Xcc-8004.4492.1 0.73 -0.4
4,300,520 - Xcc-8004.4492.1 0.73 +1.3
4,300,658 + Xcc-8004.4492.1 0.88 +1.7
4,300,658 + Xcc-8004.4492.1 0.88 -1.1
4,300,658 + Xcc-8004.4492.1 0.88 +1.6
4,300,658 + Xcc-8004.4492.1 0.88 +0.6
4,300,658 + Xcc-8004.4492.1 0.88 +1.6
4,300,659 - Xcc-8004.4492.1 0.88 -0.1
4,300,659 - Xcc-8004.4492.1 0.88 +1.5
4,300,664 + Xcc-8004.4492.1 0.88 +0.8
4,300,664 + Xcc-8004.4492.1 0.88 -1.8
4,300,664 + Xcc-8004.4492.1 0.88 +1.5
4,300,665 - Xcc-8004.4492.1 0.88 +1.1
4,300,707 - +0.6
4,300,733 + +0.8
4,300,734 - -0.2
4,300,838 - Xcc-8004.4493.1 0.18 -1.3

Or see this region's nucleotide sequence