Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4276.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4275.1 and Xcc-8004.4276.1 are separated by 45 nucleotidesXcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotidesXcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotides Xcc-8004.4275.1: Xcc-8004.4275.1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 4,092,241 to 4,093,221 Xcc-8004.4275.1 Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761 Xcc-8004.4276.1 Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628 Xcc-8004.4277.1 Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515 Xcc-8004.4278.1 Position (kb) 4093 4094Strain fitness (log2 ratio) -3 -2 -1 0 1at 4092.277 kb on + strandat 4092.277 kb on + strandat 4092.278 kb on - strandat 4092.278 kb on - strandat 4092.278 kb on - strandat 4092.282 kb on + strandat 4092.283 kb on - strandat 4092.419 kb on + strand, within Xcc-8004.4275.1at 4092.419 kb on + strand, within Xcc-8004.4275.1at 4092.420 kb on - strand, within Xcc-8004.4275.1at 4092.420 kb on - strand, within Xcc-8004.4275.1at 4092.420 kb on - strand, within Xcc-8004.4275.1at 4092.503 kb on + strand, within Xcc-8004.4275.1at 4092.504 kb on - strand, within Xcc-8004.4275.1at 4092.504 kb on - strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.712 kb on + strand, within Xcc-8004.4275.1at 4092.713 kb on - strand, within Xcc-8004.4275.1at 4092.713 kb on - strand, within Xcc-8004.4275.1at 4092.713 kb on - strand, within Xcc-8004.4275.1at 4092.752 kb on - strand, within Xcc-8004.4275.1at 4092.796 kb on + strand, within Xcc-8004.4275.1at 4093.798 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
4,092,277 + +1.1
4,092,277 + +1.2
4,092,278 - -3.1
4,092,278 - +1.2
4,092,278 - -1.8
4,092,282 + +0.7
4,092,283 - -1.8
4,092,419 + Xcc-8004.4275.1 0.18 -3.1
4,092,419 + Xcc-8004.4275.1 0.18 +0.9
4,092,420 - Xcc-8004.4275.1 0.18 -0.4
4,092,420 - Xcc-8004.4275.1 0.18 +1.1
4,092,420 - Xcc-8004.4275.1 0.18 +0.5
4,092,503 + Xcc-8004.4275.1 0.27 +0.7
4,092,504 - Xcc-8004.4275.1 0.27 +0.6
4,092,504 - Xcc-8004.4275.1 0.27 +0.6
4,092,712 + Xcc-8004.4275.1 0.48 -3.0
4,092,712 + Xcc-8004.4275.1 0.48 -0.0
4,092,712 + Xcc-8004.4275.1 0.48 -0.6
4,092,712 + Xcc-8004.4275.1 0.48 -0.9
4,092,712 + Xcc-8004.4275.1 0.48 -2.0
4,092,712 + Xcc-8004.4275.1 0.48 -3.3
4,092,712 + Xcc-8004.4275.1 0.48 +0.7
4,092,713 - Xcc-8004.4275.1 0.48 -1.5
4,092,713 - Xcc-8004.4275.1 0.48 +0.8
4,092,713 - Xcc-8004.4275.1 0.48 -2.0
4,092,752 - Xcc-8004.4275.1 0.52 -1.0
4,092,796 + Xcc-8004.4275.1 0.57 -1.4
4,093,798 + +0.1

Or see this region's nucleotide sequence