Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.412.1 and Xcc-8004.413.1 overlap by 4 nucleotides Xcc-8004.413.1 and Xcc-8004.414.1 are separated by 69 nucleotides Xcc-8004.414.1 and Xcc-8004.415.1 are separated by 153 nucleotides
Xcc-8004.412.1: Xcc-8004.412.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 399,351 to 399,899
Xcc-8004.412.1
Xcc-8004.413.1: Xcc-8004.413.1 - FIG01211305: hypothetical protein, at 399,896 to 400,438
Xcc-8004.413.1
Xcc-8004.414.1: Xcc-8004.414.1 - putative; ORF located using Glimmer/Genemark, at 400,508 to 401,038
Xcc-8004.414.1
Xcc-8004.415.1: Xcc-8004.415.1 - putative; ORF located using Glimmer/Genemark, at 401,192 to 401,983
Xcc-8004.415.1
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.535 kb on + strand, within Xcc-8004.412.1 at 399.535 kb on + strand, within Xcc-8004.412.1 at 399.536 kb on - strand, within Xcc-8004.412.1 at 399.536 kb on - strand, within Xcc-8004.412.1 at 399.553 kb on + strand, within Xcc-8004.412.1 at 399.554 kb on - strand, within Xcc-8004.412.1 at 399.767 kb on + strand, within Xcc-8004.412.1 at 399.926 kb on + strand at 399.926 kb on + strand at 399.926 kb on + strand at 399.996 kb on + strand, within Xcc-8004.413.1 at 399.996 kb on + strand, within Xcc-8004.413.1 at 400.086 kb on + strand, within Xcc-8004.413.1 at 400.086 kb on + strand, within Xcc-8004.413.1 at 400.087 kb on - strand, within Xcc-8004.413.1 at 400.087 kb on - strand, within Xcc-8004.413.1 at 400.211 kb on + strand, within Xcc-8004.413.1 at 400.211 kb on + strand, within Xcc-8004.413.1 at 400.212 kb on - strand, within Xcc-8004.413.1 at 400.212 kb on - strand, within Xcc-8004.413.1 at 400.212 kb on - strand, within Xcc-8004.413.1 at 400.264 kb on + strand, within Xcc-8004.413.1 at 400.264 kb on + strand, within Xcc-8004.413.1 at 400.265 kb on - strand, within Xcc-8004.413.1 at 400.317 kb on + strand, within Xcc-8004.413.1 at 400.318 kb on - strand, within Xcc-8004.413.1 at 400.318 kb on - strand, within Xcc-8004.413.1 at 400.509 kb on + strand at 400.561 kb on + strand, within Xcc-8004.414.1 at 400.562 kb on - strand, within Xcc-8004.414.1 at 400.562 kb on - strand, within Xcc-8004.414.1 at 400.737 kb on - strand, within Xcc-8004.414.1 at 400.810 kb on + strand, within Xcc-8004.414.1 at 400.828 kb on - strand, within Xcc-8004.414.1 at 400.860 kb on + strand, within Xcc-8004.414.1 at 400.860 kb on + strand, within Xcc-8004.414.1 at 400.861 kb on - strand, within Xcc-8004.414.1 at 400.864 kb on + strand, within Xcc-8004.414.1 at 400.864 kb on + strand, within Xcc-8004.414.1 at 400.864 kb on + strand, within Xcc-8004.414.1 at 400.926 kb on - strand, within Xcc-8004.414.1 at 400.958 kb on - strand, within Xcc-8004.414.1 at 400.958 kb on - strand, within Xcc-8004.414.1 at 401.026 kb on + strand at 401.105 kb on - strand at 401.105 kb on - strand at 401.146 kb on + strand at 401.147 kb on - strand at 401.157 kb on - strand at 401.178 kb on + strand at 401.209 kb on + strand at 401.209 kb on + strand at 401.238 kb on + strand at 401.238 kb on + strand at 401.238 kb on + strand at 401.239 kb on - strand at 401.239 kb on - strand at 401.239 kb on - strand at 401.248 kb on - strand at 401.251 kb on - strand at 401.293 kb on - strand, within Xcc-8004.415.1 at 401.329 kb on + strand, within Xcc-8004.415.1 at 401.330 kb on - strand, within Xcc-8004.415.1 at 401.338 kb on - strand, within Xcc-8004.415.1 at 401.454 kb on + strand, within Xcc-8004.415.1 at 401.454 kb on + strand, within Xcc-8004.415.1 at 401.455 kb on - strand, within Xcc-8004.415.1 at 401.455 kb on - strand, within Xcc-8004.415.1 at 401.479 kb on - strand, within Xcc-8004.415.1 at 401.576 kb on + strand, within Xcc-8004.415.1 at 401.629 kb on + strand, within Xcc-8004.415.1 at 401.630 kb on - strand, within Xcc-8004.415.1 at 401.948 kb on + strand at 401.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 399,535 + Xcc-8004.412.1 0.34 -3.7 399,535 + Xcc-8004.412.1 0.34 -1.4 399,536 - Xcc-8004.412.1 0.34 +1.4 399,536 - Xcc-8004.412.1 0.34 -0.1 399,553 + Xcc-8004.412.1 0.37 -0.3 399,554 - Xcc-8004.412.1 0.37 +0.6 399,767 + Xcc-8004.412.1 0.76 +1.2 399,926 + -3.1 399,926 + +0.6 399,926 + -0.1 399,996 + Xcc-8004.413.1 0.18 -0.0 399,996 + Xcc-8004.413.1 0.18 -3.7 400,086 + Xcc-8004.413.1 0.35 -1.8 400,086 + Xcc-8004.413.1 0.35 +0.0 400,087 - Xcc-8004.413.1 0.35 +0.1 400,087 - Xcc-8004.413.1 0.35 +0.8 400,211 + Xcc-8004.413.1 0.58 -0.0 400,211 + Xcc-8004.413.1 0.58 -2.2 400,212 - Xcc-8004.413.1 0.58 +1.2 400,212 - Xcc-8004.413.1 0.58 +0.0 400,212 - Xcc-8004.413.1 0.58 -0.4 400,264 + Xcc-8004.413.1 0.68 -1.9 400,264 + Xcc-8004.413.1 0.68 -0.3 400,265 - Xcc-8004.413.1 0.68 -2.8 400,317 + Xcc-8004.413.1 0.78 +1.1 400,318 - Xcc-8004.413.1 0.78 -2.4 400,318 - Xcc-8004.413.1 0.78 -0.4 400,509 + -0.4 400,561 + Xcc-8004.414.1 0.10 -0.1 400,562 - Xcc-8004.414.1 0.10 +1.7 400,562 - Xcc-8004.414.1 0.10 -2.3 400,737 - Xcc-8004.414.1 0.43 +0.6 400,810 + Xcc-8004.414.1 0.57 +1.7 400,828 - Xcc-8004.414.1 0.60 +1.2 400,860 + Xcc-8004.414.1 0.66 +0.8 400,860 + Xcc-8004.414.1 0.66 +0.9 400,861 - Xcc-8004.414.1 0.66 -1.2 400,864 + Xcc-8004.414.1 0.67 +1.0 400,864 + Xcc-8004.414.1 0.67 -2.5 400,864 + Xcc-8004.414.1 0.67 +0.9 400,926 - Xcc-8004.414.1 0.79 +0.0 400,958 - Xcc-8004.414.1 0.85 -1.1 400,958 - Xcc-8004.414.1 0.85 +0.0 401,026 + +1.2 401,105 - +0.1 401,105 - +0.3 401,146 + -0.1 401,147 - +2.1 401,157 - +0.4 401,178 + +0.4 401,209 + -1.2 401,209 + -1.2 401,238 + +0.2 401,238 + +0.4 401,238 + +1.4 401,239 - +2.0 401,239 - +0.8 401,239 - -1.9 401,248 - -0.5 401,251 - -0.6 401,293 - Xcc-8004.415.1 0.13 -0.4 401,329 + Xcc-8004.415.1 0.17 +1.7 401,330 - Xcc-8004.415.1 0.17 -0.0 401,338 - Xcc-8004.415.1 0.18 +0.1 401,454 + Xcc-8004.415.1 0.33 -1.4 401,454 + Xcc-8004.415.1 0.33 -0.1 401,455 - Xcc-8004.415.1 0.33 -0.2 401,455 - Xcc-8004.415.1 0.33 +0.1 401,479 - Xcc-8004.415.1 0.36 +1.0 401,576 + Xcc-8004.415.1 0.48 +0.2 401,629 + Xcc-8004.415.1 0.55 +0.2 401,630 - Xcc-8004.415.1 0.55 +1.8 401,948 + +0.6 401,998 + +0.2
Or see this region's nucleotide sequence