Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.406.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.405.1 and Xcc-8004.406.1 are separated by 312 nucleotidesXcc-8004.406.1 and Xcc-8004.407.1 overlap by 190 nucleotidesXcc-8004.407.1 and Xcc-8004.408.1 are separated by 136 nucleotides Xcc-8004.405.1: Xcc-8004.405.1 - FIG01211796: hypothetical protein, at 392,398 to 393,837 Xcc-8004.405.1 Xcc-8004.406.1: Xcc-8004.406.1 - hypothetical protein, at 394,150 to 394,791 Xcc-8004.406.1 Xcc-8004.407.1: Xcc-8004.407.1 - NADPH:quinone oxidoreductase 2, at 394,602 to 395,489 Xcc-8004.407.1 Xcc-8004.408.1: Xcc-8004.408.1 - Redox-sensing transcriptional regulator QorR, putative, at 395,626 to 396,054 Xcc-8004.408.1 Position (kb) 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 393.206 kb on + strand, within Xcc-8004.405.1at 393.240 kb on - strand, within Xcc-8004.405.1at 393.344 kb on + strand, within Xcc-8004.405.1at 393.495 kb on - strand, within Xcc-8004.405.1at 393.519 kb on - strand, within Xcc-8004.405.1at 393.752 kb on + strandat 393.752 kb on + strandat 393.752 kb on + strandat 393.752 kb on + strandat 393.752 kb on + strandat 393.753 kb on - strandat 393.753 kb on - strandat 393.957 kb on - strandat 393.957 kb on - strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.982 kb on + strandat 393.983 kb on - strandat 393.983 kb on - strandat 393.983 kb on - strandat 393.983 kb on - strandat 394.110 kb on - strandat 394.110 kb on - strandat 394.110 kb on - strandat 394.180 kb on + strandat 394.181 kb on - strandat 394.181 kb on - strandat 394.181 kb on - strandat 394.211 kb on + strandat 394.740 kb on + strandat 394.740 kb on + strandat 394.741 kb on - strandat 394.789 kb on + strandat 394.790 kb on - strandat 394.790 kb on - strandat 394.814 kb on - strand, within Xcc-8004.407.1at 394.894 kb on + strand, within Xcc-8004.407.1at 394.894 kb on + strand, within Xcc-8004.407.1at 394.894 kb on + strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.929 kb on + strand, within Xcc-8004.407.1at 394.952 kb on - strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.054 kb on - strand, within Xcc-8004.407.1at 395.054 kb on - strand, within Xcc-8004.407.1at 395.171 kb on - strand, within Xcc-8004.407.1at 395.171 kb on - strand, within Xcc-8004.407.1at 395.314 kb on + strand, within Xcc-8004.407.1at 395.315 kb on - strand, within Xcc-8004.407.1at 395.315 kb on - strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.385 kb on + strand, within Xcc-8004.407.1at 395.385 kb on + strand, within Xcc-8004.407.1at 395.385 kb on + strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.527 kb on - strandat 395.555 kb on + strandat 395.555 kb on + strandat 395.556 kb on - strandat 395.556 kb on - strandat 395.556 kb on - strandat 395.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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393,206 + Xcc-8004.405.1 0.56 -1.0
393,240 - Xcc-8004.405.1 0.58 -0.2
393,344 + Xcc-8004.405.1 0.66 -1.5
393,495 - Xcc-8004.405.1 0.76 -1.4
393,519 - Xcc-8004.405.1 0.78 -0.9
393,752 + -1.3
393,752 + +0.8
393,752 + -0.9
393,752 + +0.2
393,752 + -0.3
393,753 - -1.8
393,753 - -2.5
393,957 - +0.9
393,957 - -0.4
393,976 + -0.9
393,976 + +1.6
393,976 + +1.0
393,976 + -1.7
393,976 + -0.8
393,976 + +0.3
393,977 - -0.2
393,977 - +2.9
393,977 - +0.2
393,977 - +0.9
393,978 + -0.4
393,978 + +0.1
393,978 + +0.4
393,978 + -0.4
393,978 + +0.3
393,978 + -1.9
393,979 - +1.5
393,979 - -0.4
393,979 - -1.5
393,979 - +0.4
393,979 - -0.3
393,979 - +0.8
393,979 - +0.0
393,979 - +0.1
393,982 + +1.0
393,983 - +1.0
393,983 - -1.7
393,983 - -1.6
393,983 - -0.1
394,110 - -0.0
394,110 - -2.0
394,110 - +1.6
394,180 + +0.4
394,181 - +0.0
394,181 - +1.3
394,181 - -0.9
394,211 + +0.1
394,740 + +0.4
394,740 + -1.5
394,741 - +1.1
394,789 + +0.9
394,790 - -0.5
394,790 - -0.0
394,814 - Xcc-8004.407.1 0.24 -1.8
394,894 + Xcc-8004.407.1 0.33 -1.3
394,894 + Xcc-8004.407.1 0.33 -1.3
394,894 + Xcc-8004.407.1 0.33 -3.2
394,895 - Xcc-8004.407.1 0.33 +1.2
394,895 - Xcc-8004.407.1 0.33 -2.0
394,895 - Xcc-8004.407.1 0.33 -0.3
394,895 - Xcc-8004.407.1 0.33 +1.0
394,895 - Xcc-8004.407.1 0.33 +0.2
394,895 - Xcc-8004.407.1 0.33 -1.9
394,929 + Xcc-8004.407.1 0.37 +0.9
394,952 - Xcc-8004.407.1 0.39 -0.4
395,041 + Xcc-8004.407.1 0.49 +2.0
395,041 + Xcc-8004.407.1 0.49 +1.6
395,041 + Xcc-8004.407.1 0.49 +0.7
395,041 + Xcc-8004.407.1 0.49 +0.2
395,041 + Xcc-8004.407.1 0.49 -1.0
395,041 + Xcc-8004.407.1 0.49 +1.4
395,042 - Xcc-8004.407.1 0.50 -0.4
395,042 - Xcc-8004.407.1 0.50 -1.3
395,042 - Xcc-8004.407.1 0.50 -0.4
395,042 - Xcc-8004.407.1 0.50 -1.4
395,042 - Xcc-8004.407.1 0.50 +0.7
395,053 + Xcc-8004.407.1 0.51 +0.5
395,053 + Xcc-8004.407.1 0.51 -2.8
395,053 + Xcc-8004.407.1 0.51 -0.1
395,053 + Xcc-8004.407.1 0.51 +0.8
395,054 - Xcc-8004.407.1 0.51 +0.8
395,054 - Xcc-8004.407.1 0.51 -1.9
395,171 - Xcc-8004.407.1 0.64 +2.8
395,171 - Xcc-8004.407.1 0.64 +0.2
395,314 + Xcc-8004.407.1 0.80 +0.4
395,315 - Xcc-8004.407.1 0.80 -1.0
395,315 - Xcc-8004.407.1 0.80 -1.6
395,328 + Xcc-8004.407.1 0.82 -1.8
395,328 + Xcc-8004.407.1 0.82 +0.0
395,328 + Xcc-8004.407.1 0.82 -0.8
395,328 + Xcc-8004.407.1 0.82 +2.2
395,328 + Xcc-8004.407.1 0.82 -0.2
395,328 + Xcc-8004.407.1 0.82 -0.8
395,329 - Xcc-8004.407.1 0.82 +0.4
395,329 - Xcc-8004.407.1 0.82 +0.9
395,329 - Xcc-8004.407.1 0.82 -1.7
395,329 - Xcc-8004.407.1 0.82 +1.2
395,329 - Xcc-8004.407.1 0.82 +0.5
395,385 + Xcc-8004.407.1 0.88 -0.7
395,385 + Xcc-8004.407.1 0.88 -2.0
395,385 + Xcc-8004.407.1 0.88 -0.6
395,386 - Xcc-8004.407.1 0.88 -0.6
395,386 - Xcc-8004.407.1 0.88 +0.4
395,386 - Xcc-8004.407.1 0.88 -0.7
395,386 - Xcc-8004.407.1 0.88 -0.9
395,527 - -0.3
395,555 + +0.5
395,555 + -0.2
395,556 - +2.3
395,556 - +0.5
395,556 - +0.2
395,609 + -0.9

Or see this region's nucleotide sequence