Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1690

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1689 and Pf1N1B4_1690 are separated by 424 nucleotidesPf1N1B4_1690 and Pf1N1B4_1691 overlap by 21 nucleotidesPf1N1B4_1691 and Pf1N1B4_1692 are separated by 97 nucleotides Pf1N1B4_1689 - High-affinity choline uptake protein BetT, at 1,935,154 to 1,937,109 _1689 Pf1N1B4_1690 - Serine acetyltransferase (EC 2.3.1.30), at 1,937,534 to 1,938,460 _1690 Pf1N1B4_1691 - hypothetical protein, at 1,938,440 to 1,938,553 _1691 Pf1N1B4_1692 - D-cysteine desulfhydrase (EC 4.4.1.15), at 1,938,651 to 1,939,643 _1692 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1936.641 kb on + strand, within Pf1N1B4_1689at 1936.641 kb on + strand, within Pf1N1B4_1689at 1936.642 kb on - strand, within Pf1N1B4_1689at 1936.642 kb on - strand, within Pf1N1B4_1689at 1936.658 kb on + strand, within Pf1N1B4_1689at 1936.659 kb on - strand, within Pf1N1B4_1689at 1936.869 kb on - strand, within Pf1N1B4_1689at 1936.869 kb on - strand, within Pf1N1B4_1689at 1936.952 kb on + strandat 1936.952 kb on + strandat 1936.952 kb on + strandat 1936.953 kb on - strandat 1936.953 kb on - strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.973 kb on + strandat 1936.974 kb on - strandat 1936.974 kb on - strandat 1936.974 kb on - strandat 1936.974 kb on - strandat 1936.974 kb on - strandat 1936.974 kb on - strandat 1936.974 kb on - strandat 1936.976 kb on + strandat 1936.977 kb on - strandat 1936.977 kb on - strandat 1937.090 kb on + strandat 1937.090 kb on + strandat 1937.244 kb on - strandat 1937.265 kb on + strandat 1937.291 kb on - strandat 1937.309 kb on + strandat 1937.323 kb on + strandat 1937.323 kb on + strandat 1937.376 kb on + strandat 1937.380 kb on + strandat 1937.381 kb on - strandat 1937.381 kb on - strandat 1937.381 kb on - strandat 1937.458 kb on + strandat 1937.459 kb on - strandat 1937.459 kb on - strandat 1937.459 kb on - strandat 1937.535 kb on + strandat 1937.535 kb on + strandat 1937.536 kb on - strandat 1937.536 kb on - strandat 1937.536 kb on - strandat 1937.676 kb on + strand, within Pf1N1B4_1690at 1937.676 kb on + strand, within Pf1N1B4_1690at 1937.677 kb on - strand, within Pf1N1B4_1690at 1937.677 kb on - strand, within Pf1N1B4_1690at 1937.782 kb on - strand, within Pf1N1B4_1690at 1937.782 kb on - strand, within Pf1N1B4_1690at 1937.782 kb on - strand, within Pf1N1B4_1690at 1938.056 kb on + strand, within Pf1N1B4_1690at 1938.057 kb on - strand, within Pf1N1B4_1690at 1938.237 kb on + strand, within Pf1N1B4_1690at 1938.238 kb on - strand, within Pf1N1B4_1690at 1938.238 kb on - strand, within Pf1N1B4_1690at 1938.238 kb on - strand, within Pf1N1B4_1690at 1938.512 kb on + strand, within Pf1N1B4_1691at 1938.512 kb on + strand, within Pf1N1B4_1691at 1938.512 kb on + strand, within Pf1N1B4_1691at 1938.541 kb on + strand, within Pf1N1B4_1691at 1938.572 kb on + strandat 1938.576 kb on + strandat 1938.601 kb on + strandat 1938.601 kb on + strandat 1938.602 kb on - strandat 1938.615 kb on + strandat 1938.615 kb on + strandat 1938.615 kb on + strandat 1938.615 kb on + strandat 1938.615 kb on + strandat 1938.615 kb on + strandat 1938.615 kb on + strandat 1938.616 kb on - strandat 1938.616 kb on - strandat 1938.616 kb on - strandat 1938.616 kb on - strandat 1938.617 kb on + strandat 1938.617 kb on + strandat 1938.756 kb on + strand, within Pf1N1B4_1692at 1938.756 kb on + strand, within Pf1N1B4_1692at 1938.756 kb on + strand, within Pf1N1B4_1692at 1938.757 kb on - strand, within Pf1N1B4_1692at 1938.757 kb on - strandat 1938.757 kb on - strand, within Pf1N1B4_1692at 1938.757 kb on - strand, within Pf1N1B4_1692at 1938.757 kb on - strand, within Pf1N1B4_1692at 1938.757 kb on - strandat 1938.757 kb on - strand, within Pf1N1B4_1692at 1938.757 kb on - strand, within Pf1N1B4_1692at 1938.819 kb on + strand, within Pf1N1B4_1692at 1938.854 kb on + strand, within Pf1N1B4_1692at 1938.854 kb on + strand, within Pf1N1B4_1692at 1938.854 kb on + strand, within Pf1N1B4_1692at 1938.854 kb on + strand, within Pf1N1B4_1692at 1938.854 kb on + strand, within Pf1N1B4_1692at 1938.854 kb on + strand, within Pf1N1B4_1692at 1938.855 kb on - strand, within Pf1N1B4_1692at 1938.855 kb on - strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.978 kb on + strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.979 kb on - strand, within Pf1N1B4_1692at 1938.981 kb on - strand, within Pf1N1B4_1692at 1939.110 kb on + strand, within Pf1N1B4_1692at 1939.111 kb on - strand, within Pf1N1B4_1692at 1939.111 kb on - strand, within Pf1N1B4_1692at 1939.111 kb on - strandat 1939.155 kb on + strand, within Pf1N1B4_1692at 1939.156 kb on - strand, within Pf1N1B4_1692at 1939.156 kb on - strand, within Pf1N1B4_1692at 1939.425 kb on + strand, within Pf1N1B4_1692at 1939.425 kb on + strand, within Pf1N1B4_1692at 1939.425 kb on + strand, within Pf1N1B4_1692at 1939.425 kb on + strand, within Pf1N1B4_1692at 1939.425 kb on + strand, within Pf1N1B4_1692at 1939.425 kb on + strand, within Pf1N1B4_1692at 1939.426 kb on - strand, within Pf1N1B4_1692at 1939.426 kb on - strand, within Pf1N1B4_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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1,936,641 + Pf1N1B4_1689 0.76 -2.5
1,936,641 + Pf1N1B4_1689 0.76 +0.0
1,936,642 - Pf1N1B4_1689 0.76 -2.8
1,936,642 - Pf1N1B4_1689 0.76 -2.8
1,936,658 + Pf1N1B4_1689 0.77 -1.8
1,936,659 - Pf1N1B4_1689 0.77 +0.0
1,936,869 - Pf1N1B4_1689 0.88 +0.0
1,936,869 - Pf1N1B4_1689 0.88 +0.0
1,936,952 + +0.2
1,936,952 + -2.1
1,936,952 + +0.0
1,936,953 - +0.0
1,936,953 - +0.0
1,936,973 + -0.7
1,936,973 + +0.0
1,936,973 + +0.0
1,936,973 + +0.0
1,936,973 + -2.2
1,936,973 + +0.0
1,936,973 + +0.0
1,936,973 + +0.0
1,936,974 - +0.0
1,936,974 - +0.0
1,936,974 - +0.0
1,936,974 - -0.8
1,936,974 - +0.0
1,936,974 - -3.2
1,936,974 - +0.0
1,936,976 + +0.0
1,936,977 - +0.0
1,936,977 - +0.0
1,937,090 + +0.0
1,937,090 + +0.0
1,937,244 - -1.2
1,937,265 + +0.0
1,937,291 - +0.0
1,937,309 + +0.0
1,937,323 + +0.0
1,937,323 + -1.9
1,937,376 + -0.2
1,937,380 + -1.6
1,937,381 - +0.0
1,937,381 - +0.0
1,937,381 - +0.0
1,937,458 + +0.0
1,937,459 - +0.0
1,937,459 - +0.0
1,937,459 - +0.0
1,937,535 + -1.0
1,937,535 + -1.0
1,937,536 - -2.9
1,937,536 - +0.0
1,937,536 - -1.4
1,937,676 + Pf1N1B4_1690 0.15 +0.0
1,937,676 + Pf1N1B4_1690 0.15 -0.1
1,937,677 - Pf1N1B4_1690 0.15 -1.7
1,937,677 - Pf1N1B4_1690 0.15 -0.6
1,937,782 - Pf1N1B4_1690 0.27 +0.0
1,937,782 - Pf1N1B4_1690 0.27 -3.0
1,937,782 - Pf1N1B4_1690 0.27 -0.8
1,938,056 + Pf1N1B4_1690 0.56 +0.0
1,938,057 - Pf1N1B4_1690 0.56 +0.0
1,938,237 + Pf1N1B4_1690 0.76 +0.0
1,938,238 - Pf1N1B4_1690 0.76 +0.0
1,938,238 - Pf1N1B4_1690 0.76 +0.0
1,938,238 - Pf1N1B4_1690 0.76 -1.1
1,938,512 + Pf1N1B4_1691 0.63 +0.0
1,938,512 + Pf1N1B4_1691 0.63 +0.0
1,938,512 + Pf1N1B4_1691 0.63 -3.8
1,938,541 + Pf1N1B4_1691 0.89 +0.0
1,938,572 + +0.0
1,938,576 + -1.6
1,938,601 + +0.0
1,938,601 + +0.0
1,938,602 - -2.4
1,938,615 + +0.0
1,938,615 + +0.0
1,938,615 + +0.0
1,938,615 + -1.6
1,938,615 + +0.0
1,938,615 + +0.0
1,938,615 + -2.8
1,938,616 - -1.6
1,938,616 - -4.5
1,938,616 - +0.0
1,938,616 - +0.0
1,938,617 + +0.0
1,938,617 + +0.0
1,938,756 + Pf1N1B4_1692 0.11 +0.0
1,938,756 + Pf1N1B4_1692 0.11 +0.0
1,938,756 + Pf1N1B4_1692 0.11 +0.0
1,938,757 - Pf1N1B4_1692 0.11 +0.0
1,938,757 - +0.0
1,938,757 - Pf1N1B4_1692 0.11 -1.0
1,938,757 - Pf1N1B4_1692 0.11 +0.0
1,938,757 - Pf1N1B4_1692 0.11 +0.0
1,938,757 - +0.0
1,938,757 - Pf1N1B4_1692 0.11 +0.0
1,938,757 - Pf1N1B4_1692 0.11 +0.0
1,938,819 + Pf1N1B4_1692 0.17 +0.0
1,938,854 + Pf1N1B4_1692 0.20 +0.0
1,938,854 + Pf1N1B4_1692 0.20 -2.5
1,938,854 + Pf1N1B4_1692 0.20 +0.0
1,938,854 + Pf1N1B4_1692 0.20 +0.0
1,938,854 + Pf1N1B4_1692 0.20 +0.0
1,938,854 + Pf1N1B4_1692 0.20 +0.0
1,938,855 - Pf1N1B4_1692 0.21 +0.5
1,938,855 - Pf1N1B4_1692 0.21 +0.0
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 -2.9
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 -2.2
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 -0.8
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,978 + Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 -2.8
1,938,979 - Pf1N1B4_1692 0.33 -3.7
1,938,979 - Pf1N1B4_1692 0.33 -1.8
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,979 - Pf1N1B4_1692 0.33 +0.0
1,938,981 - Pf1N1B4_1692 0.33 +0.0
1,939,110 + Pf1N1B4_1692 0.46 -2.5
1,939,111 - Pf1N1B4_1692 0.46 +0.0
1,939,111 - Pf1N1B4_1692 0.46 -3.5
1,939,111 - -3.8
1,939,155 + Pf1N1B4_1692 0.51 -1.8
1,939,156 - Pf1N1B4_1692 0.51 +0.0
1,939,156 - Pf1N1B4_1692 0.51 -0.6
1,939,425 + Pf1N1B4_1692 0.78 +0.0
1,939,425 + Pf1N1B4_1692 0.78 +0.0
1,939,425 + Pf1N1B4_1692 0.78 +0.0
1,939,425 + Pf1N1B4_1692 0.78 -1.6
1,939,425 + Pf1N1B4_1692 0.78 +0.0
1,939,425 + Pf1N1B4_1692 0.78 +0.0
1,939,426 - Pf1N1B4_1692 0.78 +0.0
1,939,426 - Pf1N1B4_1692 0.78 -0.2

Or see this region's nucleotide sequence