Strain Fitness in Pantoea sp. MT58 around IAI47_14000

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_13995 and IAI47_14000 are separated by 14 nucleotidesIAI47_14000 and IAI47_14005 overlap by 4 nucleotides IAI47_13995: IAI47_13995 - leucine--tRNA ligase, at 2,957,408 to 2,959,990 _13995 IAI47_14000: IAI47_14000 - LPS assembly lipoprotein LptE, at 2,960,005 to 2,960,604 _14000 IAI47_14005: IAI47_14005 - DNA polymerase III subunit delta, at 2,960,601 to 2,961,632 _14005 Position (kb) 2960 2961Strain fitness (log2 ratio) -2 -1 0 1at 2959.983 kb on + strandat 2959.983 kb on + strandat 2959.983 kb on + strandat 2959.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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2,959,983 + -1.8
2,959,983 + +0.9
2,959,983 + -0.5
2,959,988 + -1.9

Or see this region's nucleotide sequence