Strain Fitness in Marinobacter adhaerens HP15 around HP15_667

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_665 and HP15_666 overlap by 1 nucleotidesHP15_666 and HP15_667 overlap by 25 nucleotidesHP15_667 and HP15_668 are separated by 1 nucleotidesHP15_668 and HP15_669 overlap by 1 nucleotidesHP15_669 and HP15_670 are separated by 74 nucleotides HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724 _665 HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284 _666 HP15_667: HP15_667 - prophage LambdaW5, minor tail protein Z-like protein, at 687,260 to 687,802 _667 HP15_668: HP15_668 - conserved hypothetical protein, at 687,804 to 688,115 _668 HP15_669: HP15_669 - protein containing Rho termination factor, N-terminal domain, at 688,115 to 688,414 _669 HP15_670: HP15_670 - peptidase U35, phage prohead, at 688,489 to 690,591 _670 Position (kb) 687 688Strain fitness (log2 ratio) -2 -1 0 1at 686.397 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.456 kb on + strand, within HP15_665at 686.456 kb on + strand, within HP15_665at 686.459 kb on - strand, within HP15_665at 686.469 kb on + strand, within HP15_665at 686.492 kb on + strand, within HP15_665at 686.618 kb on + strand, within HP15_665at 686.709 kb on + strandat 686.741 kb on - strandat 686.766 kb on + strandat 686.777 kb on + strandat 686.787 kb on - strand, within HP15_666at 686.802 kb on - strand, within HP15_666at 686.809 kb on - strand, within HP15_666at 686.839 kb on + strand, within HP15_666at 686.872 kb on + strand, within HP15_666at 686.872 kb on + strand, within HP15_666at 686.880 kb on - strand, within HP15_666at 686.903 kb on - strand, within HP15_666at 686.912 kb on - strand, within HP15_666at 686.949 kb on - strand, within HP15_666at 687.036 kb on - strand, within HP15_666at 687.140 kb on + strand, within HP15_666at 687.213 kb on - strand, within HP15_666at 687.284 kb on + strandat 687.354 kb on + strand, within HP15_667at 687.354 kb on + strand, within HP15_667at 687.425 kb on + strand, within HP15_667at 687.425 kb on + strand, within HP15_667at 687.433 kb on + strand, within HP15_667at 687.433 kb on - strand, within HP15_667at 687.433 kb on - strand, within HP15_667at 687.455 kb on - strand, within HP15_667at 687.512 kb on - strand, within HP15_667at 687.519 kb on + strand, within HP15_667at 687.526 kb on + strand, within HP15_667at 687.529 kb on - strand, within HP15_667at 687.544 kb on + strand, within HP15_667at 687.552 kb on - strand, within HP15_667at 687.782 kb on - strandat 687.848 kb on + strand, within HP15_668at 687.867 kb on + strand, within HP15_668at 687.875 kb on - strand, within HP15_668at 687.997 kb on - strand, within HP15_668at 688.048 kb on + strand, within HP15_668at 688.057 kb on - strand, within HP15_668at 688.164 kb on - strand, within HP15_669at 688.196 kb on + strand, within HP15_669at 688.267 kb on - strand, within HP15_669at 688.278 kb on + strand, within HP15_669at 688.325 kb on - strand, within HP15_669at 688.329 kb on - strand, within HP15_669at 688.338 kb on + strand, within HP15_669at 688.461 kb on + strandat 688.469 kb on - strandat 688.608 kb on + strandat 688.608 kb on + strandat 688.608 kb on + strandat 688.608 kb on + strandat 688.608 kb on + strandat 688.616 kb on - strandat 688.616 kb on - strandat 688.689 kb on + strandat 688.766 kb on + strand, within HP15_670at 688.766 kb on + strand, within HP15_670at 688.766 kb on + strand, within HP15_670at 688.799 kb on + strand, within HP15_670

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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686,397 + HP15_665 0.58 -0.3
686,428 + HP15_665 0.62 -0.0
686,428 + HP15_665 0.62 +0.0
686,428 + HP15_665 0.62 -0.1
686,428 + HP15_665 0.62 +0.5
686,428 + HP15_665 0.62 +0.4
686,436 - HP15_665 0.63 -0.9
686,436 - HP15_665 0.63 -0.3
686,436 - HP15_665 0.63 -0.5
686,436 - HP15_665 0.63 +1.3
686,436 - HP15_665 0.63 +0.4
686,456 + HP15_665 0.66 -0.4
686,456 + HP15_665 0.66 -0.2
686,459 - HP15_665 0.66 -0.0
686,469 + HP15_665 0.67 +0.8
686,492 + HP15_665 0.70 -0.1
686,618 + HP15_665 0.86 -0.5
686,709 + -0.4
686,741 - +0.6
686,766 + +0.1
686,777 + -0.2
686,787 - HP15_666 0.11 -0.3
686,802 - HP15_666 0.14 +0.3
686,809 - HP15_666 0.15 -0.3
686,839 + HP15_666 0.20 -0.2
686,872 + HP15_666 0.26 +0.5
686,872 + HP15_666 0.26 -0.5
686,880 - HP15_666 0.28 -0.1
686,903 - HP15_666 0.32 -1.2
686,912 - HP15_666 0.34 -0.1
686,949 - HP15_666 0.40 -0.2
687,036 - HP15_666 0.56 -1.5
687,140 + HP15_666 0.74 -0.2
687,213 - HP15_666 0.87 -0.2
687,284 + -0.3
687,354 + HP15_667 0.17 -0.2
687,354 + HP15_667 0.17 +0.1
687,425 + HP15_667 0.30 +0.2
687,425 + HP15_667 0.30 -0.2
687,433 + HP15_667 0.32 -0.2
687,433 - HP15_667 0.32 -1.3
687,433 - HP15_667 0.32 -0.3
687,455 - HP15_667 0.36 -1.3
687,512 - HP15_667 0.46 -2.0
687,519 + HP15_667 0.48 -1.6
687,526 + HP15_667 0.49 -0.6
687,529 - HP15_667 0.50 -0.3
687,544 + HP15_667 0.52 -0.3
687,552 - HP15_667 0.54 +0.1
687,782 - -0.1
687,848 + HP15_668 0.14 +0.5
687,867 + HP15_668 0.20 +0.0
687,875 - HP15_668 0.23 -0.8
687,997 - HP15_668 0.62 -0.1
688,048 + HP15_668 0.78 -0.7
688,057 - HP15_668 0.81 -0.3
688,164 - HP15_669 0.16 +0.1
688,196 + HP15_669 0.27 +0.2
688,267 - HP15_669 0.51 +1.0
688,278 + HP15_669 0.54 +0.1
688,325 - HP15_669 0.70 -0.1
688,329 - HP15_669 0.71 +0.1
688,338 + HP15_669 0.74 +0.2
688,461 + +0.3
688,469 - +0.4
688,608 + +0.1
688,608 + +0.2
688,608 + -1.1
688,608 + +0.1
688,608 + +1.3
688,616 - -1.3
688,616 - +0.1
688,689 + -0.8
688,766 + HP15_670 0.13 +0.6
688,766 + HP15_670 0.13 -0.8
688,766 + HP15_670 0.13 +0.2
688,799 + HP15_670 0.15 +0.1

Or see this region's nucleotide sequence