Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0552 and DVU0554 are separated by 325 nucleotides DVU0554 and DVU0555 are separated by 39 nucleotides DVU0555 and DVU0556 are separated by 27 nucleotides DVU0556 and DVU0557 overlap by 7 nucleotides
DVU0552: DVU0552 - conserved hypothetical protein (TIGR), at 622,064 to 623,029
DVU0552
DVU0554: DVU0554 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 623,355 to 624,293
DVU0554
DVU0555: DVU0555 - hypothetical protein (TIGR), at 624,333 to 624,587
DVU0555
DVU0556: DVU0556 - ISDvu3, transposase OrfA (TIGR), at 624,615 to 624,878
DVU0556
DVU0557: DVU0557 - ISDvu3, transposase OrfB, authentic point mutation (TIGR), at 624,872 to 625,726
DVU0557
Position (kb) 623
624
625 Strain fitness (log2 ratio) -1
0
1
2 at 624.293 kb on + strand at 624.545 kb on - strand, within DVU0555 at 624.551 kb on + strand, within DVU0555 at 624.559 kb on - strand, within DVU0555 at 624.817 kb on - strand, within DVU0556 at 624.952 kb on + strand at 624.976 kb on + strand, within DVU0557 at 624.998 kb on + strand, within DVU0557 at 625.031 kb on + strand, within DVU0557 at 625.088 kb on + strand, within DVU0557 at 625.110 kb on + strand, within DVU0557
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 624,293 + -1.1 624,545 - DVU0555 0.83 -0.4 624,551 + DVU0555 0.85 +2.2 624,559 - DVU0555 0.89 +0.3 624,817 - DVU0556 0.77 -0.4 624,952 + -0.9 624,976 + DVU0557 0.12 -0.4 624,998 + DVU0557 0.15 -0.2 625,031 + DVU0557 0.19 -0.6 625,088 + DVU0557 0.25 -0.3 625,110 + DVU0557 0.28 -0.4
Or see this region's nucleotide sequence