Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gmd and DVU0449 overlap by 13 nucleotides DVU0449 and tRNA-Leu are separated by 279 nucleotides tRNA-Leu and ribF are separated by 482 nucleotides
DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438
gmd
DVU0449: DVU0449 - sensor/response regulator (TIGR), at 509,426 to 513,967
DVU0449
DVU_tRNA-Leu-2: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 514,247 to 514,333
tRNA-Leu
DVU0450: ribF - riboflavin biosynthesis protein RibF (TIGR), at 514,816 to 515,760
ribF
Position (kb) 509
510
511
512
513
514 Strain fitness (log2 ratio) -1
0
1
2 at 508.536 kb on + strand, within gmd at 508.544 kb on - strand, within gmd at 508.651 kb on + strand, within gmd at 508.826 kb on - strand, within gmd at 508.866 kb on + strand, within gmd at 508.957 kb on - strand, within gmd at 508.959 kb on + strand, within gmd at 509.062 kb on - strand, within gmd at 509.474 kb on + strand at 509.503 kb on - strand at 509.508 kb on - strand at 509.615 kb on - strand at 509.619 kb on + strand at 509.705 kb on + strand at 509.793 kb on - strand at 509.836 kb on + strand at 509.844 kb on - strand at 509.844 kb on - strand at 509.865 kb on + strand at 509.873 kb on - strand at 509.882 kb on - strand, within DVU0449 at 509.961 kb on - strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.143 kb on + strand, within DVU0449 at 510.176 kb on + strand, within DVU0449 at 510.184 kb on - strand, within DVU0449 at 510.218 kb on - strand, within DVU0449 at 510.220 kb on - strand, within DVU0449 at 510.240 kb on + strand, within DVU0449 at 510.265 kb on - strand, within DVU0449 at 510.344 kb on - strand, within DVU0449 at 510.349 kb on + strand, within DVU0449 at 510.359 kb on + strand, within DVU0449 at 510.370 kb on - strand, within DVU0449 at 510.417 kb on + strand, within DVU0449 at 510.462 kb on + strand, within DVU0449 at 510.478 kb on + strand, within DVU0449 at 510.498 kb on + strand, within DVU0449 at 510.508 kb on + strand, within DVU0449 at 510.516 kb on - strand, within DVU0449 at 510.526 kb on - strand, within DVU0449 at 510.704 kb on + strand, within DVU0449 at 510.706 kb on + strand, within DVU0449 at 510.840 kb on + strand, within DVU0449 at 510.848 kb on - strand, within DVU0449 at 510.848 kb on - strand, within DVU0449 at 510.868 kb on + strand, within DVU0449 at 510.911 kb on - strand, within DVU0449 at 510.922 kb on + strand, within DVU0449 at 510.957 kb on - strand, within DVU0449 at 511.080 kb on + strand, within DVU0449 at 511.110 kb on - strand, within DVU0449 at 511.236 kb on + strand, within DVU0449 at 511.244 kb on - strand, within DVU0449 at 511.244 kb on - strand, within DVU0449 at 511.244 kb on - strand, within DVU0449 at 511.244 kb on - strand, within DVU0449 at 511.296 kb on + strand, within DVU0449 at 511.296 kb on + strand, within DVU0449 at 511.304 kb on - strand, within DVU0449 at 511.304 kb on - strand, within DVU0449 at 511.371 kb on - strand, within DVU0449 at 511.409 kb on - strand, within DVU0449 at 511.436 kb on + strand, within DVU0449 at 511.449 kb on + strand, within DVU0449 at 511.498 kb on - strand, within DVU0449 at 511.543 kb on + strand, within DVU0449 at 511.551 kb on - strand, within DVU0449 at 511.565 kb on - strand, within DVU0449 at 511.723 kb on + strand, within DVU0449 at 511.731 kb on - strand, within DVU0449 at 511.788 kb on + strand, within DVU0449 at 511.796 kb on - strand, within DVU0449 at 511.801 kb on - strand, within DVU0449 at 511.817 kb on - strand, within DVU0449 at 511.848 kb on + strand, within DVU0449 at 511.900 kb on - strand, within DVU0449 at 511.929 kb on - strand, within DVU0449 at 511.986 kb on - strand, within DVU0449 at 511.986 kb on - strand, within DVU0449 at 511.986 kb on - strand, within DVU0449 at 511.988 kb on - strand, within DVU0449 at 512.029 kb on - strand, within DVU0449 at 512.117 kb on + strand, within DVU0449 at 512.145 kb on + strand, within DVU0449 at 512.145 kb on + strand, within DVU0449 at 512.195 kb on + strand, within DVU0449 at 512.203 kb on - strand, within DVU0449 at 512.208 kb on - strand, within DVU0449 at 512.253 kb on + strand, within DVU0449 at 512.289 kb on + strand, within DVU0449 at 512.330 kb on - strand, within DVU0449 at 512.335 kb on + strand, within DVU0449 at 512.395 kb on - strand, within DVU0449 at 512.399 kb on + strand, within DVU0449 at 512.466 kb on - strand, within DVU0449 at 512.466 kb on - strand, within DVU0449 at 512.550 kb on + strand, within DVU0449 at 512.555 kb on + strand, within DVU0449 at 512.560 kb on + strand, within DVU0449 at 512.601 kb on + strand, within DVU0449 at 512.606 kb on + strand, within DVU0449 at 512.609 kb on - strand, within DVU0449 at 512.628 kb on - strand, within DVU0449 at 512.688 kb on + strand, within DVU0449 at 512.707 kb on + strand, within DVU0449 at 512.707 kb on + strand, within DVU0449 at 512.715 kb on - strand, within DVU0449 at 512.715 kb on - strand, within DVU0449 at 512.715 kb on - strand, within DVU0449 at 512.811 kb on + strand, within DVU0449 at 512.811 kb on + strand, within DVU0449 at 512.818 kb on + strand, within DVU0449 at 512.831 kb on - strand, within DVU0449 at 512.852 kb on + strand, within DVU0449 at 512.871 kb on + strand, within DVU0449 at 512.927 kb on + strand, within DVU0449 at 512.936 kb on - strand, within DVU0449 at 512.936 kb on - strand, within DVU0449 at 512.990 kb on - strand, within DVU0449 at 513.050 kb on - strand, within DVU0449 at 513.069 kb on + strand, within DVU0449 at 513.092 kb on + strand, within DVU0449 at 513.092 kb on + strand, within DVU0449 at 513.092 kb on + strand, within DVU0449 at 513.100 kb on - strand, within DVU0449 at 513.100 kb on - strand, within DVU0449 at 513.100 kb on - strand, within DVU0449 at 513.100 kb on - strand, within DVU0449 at 513.110 kb on - strand, within DVU0449 at 513.127 kb on + strand, within DVU0449 at 513.167 kb on - strand, within DVU0449 at 513.207 kb on - strand, within DVU0449 at 513.239 kb on - strand, within DVU0449 at 513.249 kb on - strand, within DVU0449 at 513.314 kb on + strand, within DVU0449 at 513.319 kb on + strand, within DVU0449 at 513.319 kb on + strand, within DVU0449 at 513.422 kb on + strand, within DVU0449 at 513.468 kb on - strand, within DVU0449 at 513.526 kb on + strand at 513.549 kb on - strand at 513.589 kb on - strand at 513.622 kb on + strand at 513.622 kb on + strand at 513.630 kb on - strand at 513.650 kb on - strand at 513.696 kb on + strand at 513.719 kb on + strand at 513.719 kb on + strand at 513.719 kb on + strand at 513.801 kb on + strand at 513.825 kb on - strand at 514.002 kb on + strand at 514.068 kb on + strand at 514.068 kb on + strand at 514.068 kb on + strand at 514.076 kb on - strand at 514.089 kb on + strand at 514.089 kb on + strand at 514.091 kb on - strand at 514.141 kb on - strand at 514.170 kb on + strand at 514.420 kb on - strand at 514.431 kb on - strand at 514.556 kb on - strand at 514.561 kb on + strand at 514.561 kb on + strand at 514.561 kb on + strand at 514.561 kb on + strand at 514.569 kb on - strand at 514.569 kb on - strand at 514.569 kb on - strand at 514.576 kb on + strand at 514.584 kb on - strand at 514.585 kb on + strand at 514.592 kb on - strand at 514.631 kb on + strand at 514.653 kb on + strand at 514.694 kb on - strand at 514.710 kb on + strand at 514.739 kb on + strand at 514.749 kb on + strand at 514.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 508,536 + gmd DVU0448 0.21 +1.4 508,544 - gmd DVU0448 0.22 +0.1 508,651 + gmd DVU0448 0.31 +1.5 508,826 - gmd DVU0448 0.47 -0.9 508,866 + gmd DVU0448 0.50 +0.8 508,957 - gmd DVU0448 0.58 -1.0 508,959 + gmd DVU0448 0.58 +0.4 509,062 - gmd DVU0448 0.67 +1.4 509,474 + +0.3 509,503 - -0.1 509,508 - +0.0 509,615 - -0.2 509,619 + -0.0 509,705 + +0.6 509,793 - -0.1 509,836 + +0.2 509,844 - +0.1 509,844 - -0.0 509,865 + -0.0 509,873 - -0.4 509,882 - DVU0449 0.10 +0.2 509,961 - DVU0449 0.12 +0.5 510,114 + DVU0449 0.15 +0.3 510,114 + DVU0449 0.15 +1.2 510,114 + DVU0449 0.15 -0.2 510,127 - DVU0449 0.15 -0.0 510,127 - DVU0449 0.15 -1.0 510,127 - DVU0449 0.15 -0.8 510,127 - DVU0449 0.15 +0.7 510,143 + DVU0449 0.16 +1.1 510,176 + DVU0449 0.17 +0.2 510,184 - DVU0449 0.17 -0.2 510,218 - DVU0449 0.17 +0.3 510,220 - DVU0449 0.17 +0.8 510,240 + DVU0449 0.18 -0.7 510,265 - DVU0449 0.18 +0.3 510,344 - DVU0449 0.20 +0.8 510,349 + DVU0449 0.20 -0.6 510,359 + DVU0449 0.21 +2.0 510,370 - DVU0449 0.21 -0.5 510,417 + DVU0449 0.22 -0.0 510,462 + DVU0449 0.23 -0.7 510,478 + DVU0449 0.23 -0.2 510,498 + DVU0449 0.24 -0.0 510,508 + DVU0449 0.24 +0.5 510,516 - DVU0449 0.24 -1.0 510,526 - DVU0449 0.24 +0.2 510,704 + DVU0449 0.28 +0.3 510,706 + DVU0449 0.28 -0.2 510,840 + DVU0449 0.31 -0.8 510,848 - DVU0449 0.31 +0.4 510,848 - DVU0449 0.31 -0.7 510,868 + DVU0449 0.32 +0.4 510,911 - DVU0449 0.33 -1.4 510,922 + DVU0449 0.33 -0.5 510,957 - DVU0449 0.34 +0.7 511,080 + DVU0449 0.36 +1.1 511,110 - DVU0449 0.37 -0.4 511,236 + DVU0449 0.40 +0.8 511,244 - DVU0449 0.40 -0.1 511,244 - DVU0449 0.40 -0.3 511,244 - DVU0449 0.40 -0.8 511,244 - DVU0449 0.40 -1.6 511,296 + DVU0449 0.41 -0.4 511,296 + DVU0449 0.41 +0.1 511,304 - DVU0449 0.41 +0.1 511,304 - DVU0449 0.41 -0.7 511,371 - DVU0449 0.43 +0.2 511,409 - DVU0449 0.44 +0.1 511,436 + DVU0449 0.44 +1.0 511,449 + DVU0449 0.45 -0.9 511,498 - DVU0449 0.46 +0.5 511,543 + DVU0449 0.47 +0.8 511,551 - DVU0449 0.47 -0.3 511,565 - DVU0449 0.47 -0.4 511,723 + DVU0449 0.51 +0.6 511,731 - DVU0449 0.51 -0.3 511,788 + DVU0449 0.52 -0.2 511,796 - DVU0449 0.52 +0.9 511,801 - DVU0449 0.52 -0.1 511,817 - DVU0449 0.53 +1.0 511,848 + DVU0449 0.53 +1.6 511,900 - DVU0449 0.54 +0.1 511,929 - DVU0449 0.55 +0.1 511,986 - DVU0449 0.56 -0.7 511,986 - DVU0449 0.56 +0.8 511,986 - DVU0449 0.56 -0.1 511,988 - DVU0449 0.56 +0.2 512,029 - DVU0449 0.57 -0.3 512,117 + DVU0449 0.59 -0.5 512,145 + DVU0449 0.60 -0.4 512,145 + DVU0449 0.60 -0.4 512,195 + DVU0449 0.61 +0.2 512,203 - DVU0449 0.61 +1.4 512,208 - DVU0449 0.61 -0.2 512,253 + DVU0449 0.62 -0.3 512,289 + DVU0449 0.63 -0.5 512,330 - DVU0449 0.64 -0.1 512,335 + DVU0449 0.64 +1.3 512,395 - DVU0449 0.65 +1.0 512,399 + DVU0449 0.65 -0.5 512,466 - DVU0449 0.67 -0.8 512,466 - DVU0449 0.67 -0.7 512,550 + DVU0449 0.69 +0.7 512,555 + DVU0449 0.69 -0.2 512,560 + DVU0449 0.69 -0.2 512,601 + DVU0449 0.70 +0.4 512,606 + DVU0449 0.70 -0.3 512,609 - DVU0449 0.70 -0.1 512,628 - DVU0449 0.70 +0.0 512,688 + DVU0449 0.72 -0.0 512,707 + DVU0449 0.72 -0.2 512,707 + DVU0449 0.72 -0.0 512,715 - DVU0449 0.72 -0.1 512,715 - DVU0449 0.72 -0.0 512,715 - DVU0449 0.72 -0.6 512,811 + DVU0449 0.75 -0.2 512,811 + DVU0449 0.75 +0.0 512,818 + DVU0449 0.75 +0.4 512,831 - DVU0449 0.75 +0.5 512,852 + DVU0449 0.75 -0.2 512,871 + DVU0449 0.76 +0.4 512,927 + DVU0449 0.77 +0.0 512,936 - DVU0449 0.77 -0.5 512,936 - DVU0449 0.77 +0.2 512,990 - DVU0449 0.78 +0.2 513,050 - DVU0449 0.80 +1.0 513,069 + DVU0449 0.80 -0.0 513,092 + DVU0449 0.81 -0.6 513,092 + DVU0449 0.81 -0.4 513,092 + DVU0449 0.81 +0.1 513,100 - DVU0449 0.81 +0.2 513,100 - DVU0449 0.81 -0.1 513,100 - DVU0449 0.81 -1.3 513,100 - DVU0449 0.81 +1.6 513,110 - DVU0449 0.81 -0.1 513,127 + DVU0449 0.81 +0.6 513,167 - DVU0449 0.82 +0.2 513,207 - DVU0449 0.83 +0.5 513,239 - DVU0449 0.84 -0.3 513,249 - DVU0449 0.84 +0.5 513,314 + DVU0449 0.86 +0.7 513,319 + DVU0449 0.86 -0.6 513,319 + DVU0449 0.86 +0.2 513,422 + DVU0449 0.88 +0.6 513,468 - DVU0449 0.89 -0.4 513,526 + -0.7 513,549 - -0.6 513,589 - -0.3 513,622 + +0.2 513,622 + -0.7 513,630 - -0.3 513,650 - -0.2 513,696 + -0.9 513,719 + -0.2 513,719 + +0.4 513,719 + -0.0 513,801 + +0.4 513,825 - -0.5 514,002 + -0.4 514,068 + +0.2 514,068 + -1.0 514,068 + +0.1 514,076 - +0.1 514,089 + -0.8 514,089 + +0.3 514,091 - -0.0 514,141 - -0.0 514,170 + -0.7 514,420 - +1.4 514,431 - +0.3 514,556 - +0.6 514,561 + -0.1 514,561 + -0.2 514,561 + -0.0 514,561 + -1.4 514,569 - -0.1 514,569 - +0.4 514,569 - -0.7 514,576 + -0.8 514,584 - -0.4 514,585 + -0.1 514,592 - +1.4 514,631 + -0.2 514,653 + -0.2 514,694 - -0.2 514,710 + +0.1 514,739 + +0.7 514,749 + +0.3 514,802 - +0.3
Or see this region's nucleotide sequence