Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2911

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2909 and DVU2910 are separated by 12 nucleotidesDVU2910 and DVU2911 are separated by 200 nucleotidesDVU2911 and rpmE are separated by 201 nucleotidesrpmE and DVU2913 are separated by 114 nucleotides DVU2909: DVU2909 - transcriptional regulator, MarR family (TIGR), at 3,010,822 to 3,011,235 DVU2909 DVU2910: DVU2910 - membrane protein, putative (TIGR), at 3,011,248 to 3,011,853 DVU2910 DVU2911: DVU2911 - hemolysin A (TIGR), at 3,012,054 to 3,012,815 DVU2911 DVU2912: rpmE - ribosomal protein L31 (TIGR), at 3,013,017 to 3,013,232 rpmE DVU2913: DVU2913 - lipoprotein, putative (TIGR), at 3,013,347 to 3,014,354 DVU2913 Position (kb) 3012 3013Strain fitness (log2 ratio) -3 -2 -1 0 1at 3011.083 kb on + strand, within DVU2909at 3011.086 kb on - strand, within DVU2909at 3011.101 kb on - strand, within DVU2909at 3011.142 kb on - strand, within DVU2909at 3011.153 kb on + strand, within DVU2909at 3011.185 kb on - strand, within DVU2909at 3011.185 kb on - strand, within DVU2909at 3011.185 kb on - strand, within DVU2909at 3011.185 kb on - strand, within DVU2909at 3011.185 kb on - strand, within DVU2909at 3011.187 kb on + strand, within DVU2909at 3011.238 kb on - strandat 3011.321 kb on + strand, within DVU2910at 3011.321 kb on + strand, within DVU2910at 3011.335 kb on - strand, within DVU2910at 3011.382 kb on + strand, within DVU2910at 3011.483 kb on + strand, within DVU2910at 3011.489 kb on - strand, within DVU2910at 3011.566 kb on - strand, within DVU2910at 3011.601 kb on - strand, within DVU2910at 3011.714 kb on - strand, within DVU2910at 3011.762 kb on + strand, within DVU2910at 3011.777 kb on + strand, within DVU2910at 3011.828 kb on + strandat 3011.893 kb on - strandat 3011.953 kb on + strandat 3012.182 kb on - strand, within DVU2911at 3012.197 kb on - strand, within DVU2911at 3012.214 kb on + strand, within DVU2911at 3012.217 kb on - strand, within DVU2911at 3012.217 kb on - strand, within DVU2911at 3012.241 kb on - strand, within DVU2911at 3012.359 kb on + strand, within DVU2911at 3012.372 kb on - strand, within DVU2911at 3012.457 kb on - strand, within DVU2911at 3012.474 kb on + strand, within DVU2911at 3012.477 kb on - strand, within DVU2911at 3012.482 kb on - strand, within DVU2911at 3012.482 kb on - strand, within DVU2911at 3012.525 kb on - strand, within DVU2911at 3012.534 kb on + strand, within DVU2911at 3012.703 kb on + strand, within DVU2911at 3012.723 kb on - strand, within DVU2911at 3012.742 kb on + strandat 3012.743 kb on - strandat 3012.747 kb on + strandat 3012.778 kb on - strandat 3012.789 kb on - strandat 3012.799 kb on - strandat 3013.661 kb on + strand, within DVU2913at 3013.661 kb on + strand, within DVU2913at 3013.666 kb on + strand, within DVU2913at 3013.753 kb on + strand, within DVU2913at 3013.761 kb on - strand, within DVU2913

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
3,011,083 + DVU2909 0.63 +0.9
3,011,086 - DVU2909 0.64 +1.4
3,011,101 - DVU2909 0.67 +0.6
3,011,142 - DVU2909 0.77 +0.8
3,011,153 + DVU2909 0.80 +0.4
3,011,185 - DVU2909 0.88 +1.1
3,011,185 - DVU2909 0.88 +0.8
3,011,185 - DVU2909 0.88 -0.2
3,011,185 - DVU2909 0.88 +0.8
3,011,185 - DVU2909 0.88 +0.4
3,011,187 + DVU2909 0.88 +0.3
3,011,238 - +0.1
3,011,321 + DVU2910 0.12 +0.1
3,011,321 + DVU2910 0.12 +1.0
3,011,335 - DVU2910 0.14 +1.3
3,011,382 + DVU2910 0.22 +0.6
3,011,483 + DVU2910 0.39 +1.5
3,011,489 - DVU2910 0.40 +0.5
3,011,566 - DVU2910 0.52 +0.7
3,011,601 - DVU2910 0.58 +0.0
3,011,714 - DVU2910 0.77 -0.1
3,011,762 + DVU2910 0.85 +0.7
3,011,777 + DVU2910 0.87 -0.9
3,011,828 + +0.4
3,011,893 - -0.1
3,011,953 + -0.3
3,012,182 - DVU2911 0.17 -0.3
3,012,197 - DVU2911 0.19 -0.3
3,012,214 + DVU2911 0.21 -3.2
3,012,217 - DVU2911 0.21 -1.0
3,012,217 - DVU2911 0.21 -1.1
3,012,241 - DVU2911 0.25 +0.1
3,012,359 + DVU2911 0.40 -0.4
3,012,372 - DVU2911 0.42 +1.2
3,012,457 - DVU2911 0.53 -0.2
3,012,474 + DVU2911 0.55 -0.7
3,012,477 - DVU2911 0.56 -1.1
3,012,482 - DVU2911 0.56 +0.0
3,012,482 - DVU2911 0.56 +0.0
3,012,525 - DVU2911 0.62 -1.9
3,012,534 + DVU2911 0.63 -0.2
3,012,703 + DVU2911 0.85 -1.8
3,012,723 - DVU2911 0.88 +0.0
3,012,742 + +1.6
3,012,743 - +0.0
3,012,747 + -1.0
3,012,778 - -1.0
3,012,789 - -1.2
3,012,799 - -0.2
3,013,661 + DVU2913 0.31 -1.1
3,013,661 + DVU2913 0.31 -1.0
3,013,666 + DVU2913 0.32 -2.5
3,013,753 + DVU2913 0.40 -0.6
3,013,761 - DVU2913 0.41 -1.0

Or see this region's nucleotide sequence